CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79321	Canola	mitochondrion, plastid	93.41	92.85
Bra003609.1-P	Field mustard	mitochondrion, plastid	91.34	90.79
AT1G79490.1	Thale cress	mitochondrion, plastid	85.37	83.73
KRH57615	Soybean	cytosol	69.15	77.88
VIT_12s0028g00090.t01	Wine grape	plastid	72.93	74.56
PGSC0003DMT400067470	Potato	mitochondrion	72.07	74.43
Solyc08g078150.1.1	Tomato	nucleus	71.71	74.06
KRG94011	Soybean	plastid	72.44	72.62
GSMUA_Achr11P...	Banana	mitochondrion	54.39	59.71
TraesCS2A01G424400.1	Wheat	mitochondrion	53.17	56.19
TraesCS2D01G422200.1	Wheat	mitochondrion	51.83	54.77
Os04t0612800-01	Rice	mitochondrion	51.83	54.28
Zm00001d002345_P001	Maize	mitochondrion	51.83	54.0
KXG27099	Sorghum	mitochondrion	51.95	53.99
TraesCS2B01G444000.1	Wheat	plastid	52.07	52.72
HORVU2Hr1G099330.11	Barley	mitochondrion	48.17	50.9
CDX85855	Canola	cytosol	14.51	24.19
CDX68166	Canola	cytosol	15.24	23.99
CDY22765	Canola	cytosol	13.9	20.69
CDY42535	Canola	cytosol	13.9	20.69
CDX73110	Canola	cytosol	7.44	20.54
CDY45392	Canola	mitochondrion	17.93	19.92
CDX96689	Canola	plastid	18.9	19.47
CDX83800	Canola	plastid	18.05	19.25
CDX77673	Canola	plastid	16.59	19.13
CDY33481	Canola	plastid	16.59	19.13
CDY19261	Canola	plastid	19.15	18.78
CDY26713	Canola	plastid	19.63	18.74
CDX73109	Canola	plastid	9.27	18.23
CDY32239	Canola	plastid	15.12	17.71
CDY34461	Canola	plastid	15.0	17.57

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX67993	ProteinID:CDX67993	ProteinID:CDX67993.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099209001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF326	InterPro:Pentatricopeptide_repeat	SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EF2319	SEG:seg	:	:	:

Description

BnaA07g20330D

Coordinates

chrLK031787:-:3241350..3243812

Molecular Weight (calculated)

92213.8 Da

IEP (calculated)

9.451

GRAVY (calculated)

-0.047

Length

820 amino acids

Sequence
(BLAST)

001: MLRLRTAKSI PRNVISTLNR STTISATPSP LNPSLAANLH SPSIRLLRSF TVCSVSRNTV ANQSPSLYRS LCSSESSSWT EEVEYLDESG SVIHSGKGIR
101: SVEPGVDDHV MVGGLKKPLM NASAVAKIVE VVQRWKWGPE LETHLDKLQF LPSMVHVKQS LKIVEDVDAG LSLFRWVKKQ PWYVPCDECY VVLFDGLNKG
201: KDFEGIQKLF EEMVQDSGRR SDHHHSLGAY NQVIQYLAKA EKLEVAFCCF KKAQDCGCKI DTQTYNNLMM LFLNKGLPYK AFEIYESMEK TDSLLDGSTY
301: ELIIPSLAKS GRLDAAFKLF QQMKERKLRP SFSVFASLVD SMGKAGRLDT SMKVYMEMQG FGHRPSATMF VSLIDSYAKA GKLDTALRLW DEMKSSGFRP
401: NFGLYTMIIE SHAKSGKLEV AMSVFKDMEK AGFLPTPSTY SCLLEMHAGS GQVDSAMKIY NSMTNAGLRP GLSSYISLLT LLANKRLVDV AGKILLEMKA
501: MGYSVDVCAS DVLMIYIKDA SVDLALKWLR FMGSSGIKTN NFIIRQLFES CMKNGLYDSA RPLLETLVHS SGKVDLVLYT SILAHLVRCQ DEDKERQLMS
601: ILSTTKHKAH AFMCGLFTGP EQRKQPVLTF VREFYQGIDY ELEEGAARYF VNVLLNYLVL MGQINRARCV WKVAYENKLF PKAIVFDQHI AWSLDVRNLS
701: VGAALIAVVH TLHRFRKRML YYGVVPRRIK LVTGPTLKIV IAQMLSSVES PFEVSKVVLR APGDSVMEWF KKPIVQQFLL NEIPSRADIL MHKLNVMFPS
801: SAPELRSMFP PKPIMSSKSF

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.