CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85855	Canola	cytosol	51.91	88.21
CDX68166	Canola	cytosol	54.67	87.72
CDY26713	Canola	plastid	89.11	86.73
CDX73110	Canola	cytosol	28.35	79.8
HORVU0Hr1G012890.2	Barley	cytosol	37.8	72.98
CDX83800	Canola	plastid	64.35	69.96
AT1G18900.3	Thale cress	mitochondrion	72.49	68.4
CDY45392	Canola	mitochondrion	59.09	66.94
CDX96689	Canola	plastid	63.04	66.21
PGSC0003DMT400034282	Potato	mitochondrion	60.65	58.68
KRH54492	Soybean	mitochondrion	59.93	56.8
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	61.0	56.79
CDX73109	Canola	plastid	27.51	55.16
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	60.89	55.15
KRH63421	Soybean	plastid	59.21	55.12
KRH56975	Soybean	mitochondrion	57.06	54.45
GSMUA_Achr8P15270_001	Banana	mitochondrion	51.79	51.43
TraesCS5D01G012800.1	Wheat	mitochondrion	52.27	51.35
TraesCSU01G073400.1	Wheat	mitochondrion	52.15	51.17
TraesCS5A01G004000.1	Wheat	mitochondrion	51.67	50.88
EES17501	Sorghum	mitochondrion	51.91	50.88
Zm00001d031217_P003	Maize	mitochondrion	51.67	50.64
HORVU5Hr1G000760.8	Barley	mitochondrion	51.91	50.64
Os12t0638900-01	Rice	mitochondrion	50.6	49.24
CDY42535	Canola	cytosol	13.04	19.78
CDY22765	Canola	cytosol	13.04	19.78
CDX67993	Canola	mitochondrion, plastid	18.78	19.15
CDX79321	Canola	mitochondrion, plastid	18.42	18.67
CDY33481	Canola	plastid	15.19	17.86
CDX77673	Canola	plastid	15.19	17.86
CDY32239	Canola	plastid	14.71	17.57
CDY34461	Canola	plastid	14.35	17.14

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078G1R8	EnsemblPlants:CDY19261	ProteinID:CDY19261	ProteinID:CDY19261.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00006577001	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom
InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EBF94D	SEG:seg	:

Description

BnaC05g14620DBnaC05g14620D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G1R8]

Coordinates

chrLK032093:+:664477..667662

Molecular Weight (calculated)

93083.3 Da

IEP (calculated)

8.713

GRAVY (calculated)

-0.354

Length

836 amino acids

Sequence
(BLAST)

001: MMRPQQISKL SSSARSFFLS GSRSSAADGS PSAFNDDEPC VSRRQQLRHE AAQDEKLPSS IITRKPLVAG SILPGEAESK PVVLKKVDGS GRPSLLPQHV
101: CSSSSPALPS KPHSVTYASI REEEEVSSSA PIGDQIFRAG YAAVSILSDL ANFKLPSSDG GSSEVFGLGK SCMVDPSRPI TSVKSVIRRE DLTKAYPRSP
201: AAKESSAGKI RNHSSNFRGA KEGFKQVSLQ KRYHHHASGK RTTSMLQRHN NIDSNRFVPN EMMKAASGSR QYCNVKEVEN VSSILKTFRW GPAAETALEN
301: LRLTMGPYQA NQVLKKMNDY GNALGFFYWL KRQPKFKHDE HTYTTMVGNL GRAKQFRAIN RLLDEMVRDG CRPNTVTYNR LIHSYGRANY LNEAMNVFNQ
401: MQEAGCEPDR VTYCTLIDIH AKAGFLDVAM DMHQRMEAAG ISTDTFTYSV IINCLGKAGH LPAAHKLFCE MVDQGCTPNL VTYNIMMDLH AKARNYQSAL
501: KLYRDMQNAG FRPDKVTYSI VMEVLGHCGY LEEAEGVFTE MQRDNWVPDE PVYGLLVDLW GKAGNVEKAW YWYQAMFHAG LLPNVPTCNS LLSTFLRVDK
601: IGEAYELLQN MLALGLRPSL QTYTLLLSCC TDARSKLDMG YCGQLMASTG HPAHMFLLKM PSAGPDGQNV RNHVNNFLDL MHSEDRESKR GLVDAVVDFL
701: HKSGQKEEAG SVWEVAAQKN VFPDALREKS SSYWLINLHV MSEGTAVTAL SRTLAWFRKQ MLVSGSCPSR IDIVTGWGRR SRVTGTSMVR QAVEELLNMF
801: GSPFFTESGN SGCFVGCGES LNRWLVQSYV ERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.