Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- endoplasmic reticulum 2
- extracellular 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400034282 | Potato | mitochondrion | 91.12 | 97.34 |
| CDX85855 | Canola | cytosol | 44.31 | 83.13 |
| CDX68166 | Canola | cytosol | 46.7 | 82.73 |
| Bra003787.1-P | Field mustard | cytosol | 43.88 | 82.32 |
| CDX73110 | Canola | cytosol | 24.81 | 77.1 |
| HORVU0Hr1G012890.2 | Barley | cytosol | 34.56 | 73.67 |
| Bra015895.1-P | Field mustard | mitochondrion | 51.35 | 64.23 |
| CDY45392 | Canola | mitochondrion | 51.35 | 64.23 |
| VIT_17s0000g05510.t01 | Wine grape | endoplasmic reticulum | 59.8 | 61.47 |
| KRH54492 | Soybean | mitochondrion | 58.4 | 61.11 |
| CDY19261 | Canola | plastid | 55.15 | 60.89 |
| Bra025697.1-P | Field mustard | plastid | 54.93 | 60.65 |
| KRH56975 | Soybean | mitochondrion | 56.66 | 59.7 |
| KRH63421 | Soybean | plastid | 57.96 | 59.58 |
| AT1G74750.2 | Thale cress | plastid | 54.6 | 58.95 |
| CDY26713 | Canola | plastid | 54.39 | 58.44 |
| Bra016533.1-P | Field mustard | plastid | 48.75 | 58.37 |
| CDX83800 | Canola | plastid | 48.54 | 58.26 |
| AT1G18900.3 | Thale cress | mitochondrion | 55.47 | 57.79 |
| CDX96689 | Canola | plastid | 48.21 | 55.9 |
| GSMUA_Achr8P15270_001 | Banana | mitochondrion | 50.49 | 55.34 |
| EES17501 | Sorghum | mitochondrion | 50.7 | 54.87 |
| TraesCS5D01G012800.1 | Wheat | mitochondrion | 49.95 | 54.17 |
| Zm00001d031217_P003 | Maize | mitochondrion | 49.73 | 53.81 |
| TraesCSU01G073400.1 | Wheat | mitochondrion | 49.62 | 53.76 |
| TraesCS5A01G004000.1 | Wheat | mitochondrion | 49.08 | 53.36 |
| HORVU5Hr1G000760.8 | Barley | mitochondrion | 49.51 | 53.33 |
| Os12t0638900-01 | Rice | mitochondrion | 49.3 | 52.97 |
| CDX73109 | Canola | plastid | 22.64 | 50.12 |
| Solyc09g042290.1.1 | Tomato | cytosol | 9.21 | 20.83 |
| Solyc08g077140.1.1 | Tomato | nucleus | 5.96 | 20.37 |
| Solyc11g012670.1.1 | Tomato | nucleus | 14.52 | 19.45 |
| Solyc08g078150.1.1 | Tomato | nucleus | 15.82 | 18.39 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 | InterPro:IPR002625 |
| InterPro:IPR002885 | InterPro:IPR011990 | UniProt:K4BKJ1 | PFAM:PF01535 | PFAM:PF12854 | PFAM:PF13041 |
| PFscan:PS50828 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF268 | InterPro:Pentatricopeptide_repeat | SMART:SM00463 |
| SUPFAM:SSF160443 | SUPFAM:SSF48452 | InterPro:Smr_dom | InterPro:Smr_dom_sf | EnsemblPlantsGene:Solyc03g113380.2 | EnsemblPlants:Solyc03g113380.2.1 |
| TIGRFAMs:TIGR00756 | TMHMM:TMhelix | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0002767C16 | : | : |
Description
No Description!
Coordinates
chr3:-:63526584..63533024
Molecular Weight (calculated)
102632.0 Da
IEP (calculated)
8.689
GRAVY (calculated)
-0.230
Length
923 amino acids
Sequence
(BLAST)
(BLAST)
001: MIVDENDEKL AQGNKVMCFV NFTMYGMILV YYNFSSFTFV FLFILLVALK PRLPIPRKTM LRAKQLGTLS QSARSFFLGG SRCSAGDGSS CTCSEDETCI
101: SKRLQTKNDV RHPQISSNLV SKSSVGVGAL LSGDAVKVVT SKKNESLDSP VSRPQAVPVS TLSGRVDSVK YGNIDAEITV QSSPPISDQF VRAGIAAVSF
201: LSDVVNYKIP MLDGSKVLSS SNNCMVDHTK PVSNVRPSNI NTSRNDKLQG KASTDTPVTS TLAHNSNYTK NKGDKSNSVR GRNPVSNSSV GKVESHGVIP
301: DSRDRRKTMP PKPRTYPNRN MTNVRGSEGK LKHEIPEGFS RPQRATKLPS AGVMVRQFSN SSHVVGTVSR IIQQLNWSPE TENALRELNY LLDPYQANQV
401: LKQIHDHAVA LGFFYWLKQQ PGFKHDGHTY TTMVGILGRA RQFGAINKLL EQMVKDGCQP NVVTYNRLIH SYGRANYLRE ALHVFSQMQE ARVEPDRVTY
501: CTLIDIHAKA GYLDVAMDLY ERMQDAGLSP DTFTYSVIIN CLGKAGHLDA AHKLFCEMVN QGCVPNLVTY NIMIALHAKA RNYSSALQLY RDMQNAGFEP
601: DKVTYSIVME VLGHCGYLEE AEAVFTEMKR KNWVPDEPVY GLLVDLWGKA GNVEKAWNWY HAMINAGLCP NVPTCNSLLS AFLRVHRLPD AYDLLQSMLE
701: LGLNPSLQTY TLLLSCCTEA QTSFDMSFCC ELMAVTRHPA HTFLLTMPAA GPDGQNVRDH VGSFLDLMHS EDRESKRGLV DSVVDFLHKS GLKEEAGSVW
801: EVAADKNVYP DAVREKSSSY WLINLHVMSD GTAIIALSRT LAWFRRQMLI SGIRPSRIDI VTGWGRRSRV TGSSMVRQAV QELLNMFGFP FLAQNGNSGC
901: FVGCGEPLSR WLVQPYVERM HLL
101: SKRLQTKNDV RHPQISSNLV SKSSVGVGAL LSGDAVKVVT SKKNESLDSP VSRPQAVPVS TLSGRVDSVK YGNIDAEITV QSSPPISDQF VRAGIAAVSF
201: LSDVVNYKIP MLDGSKVLSS SNNCMVDHTK PVSNVRPSNI NTSRNDKLQG KASTDTPVTS TLAHNSNYTK NKGDKSNSVR GRNPVSNSSV GKVESHGVIP
301: DSRDRRKTMP PKPRTYPNRN MTNVRGSEGK LKHEIPEGFS RPQRATKLPS AGVMVRQFSN SSHVVGTVSR IIQQLNWSPE TENALRELNY LLDPYQANQV
401: LKQIHDHAVA LGFFYWLKQQ PGFKHDGHTY TTMVGILGRA RQFGAINKLL EQMVKDGCQP NVVTYNRLIH SYGRANYLRE ALHVFSQMQE ARVEPDRVTY
501: CTLIDIHAKA GYLDVAMDLY ERMQDAGLSP DTFTYSVIIN CLGKAGHLDA AHKLFCEMVN QGCVPNLVTY NIMIALHAKA RNYSSALQLY RDMQNAGFEP
601: DKVTYSIVME VLGHCGYLEE AEAVFTEMKR KNWVPDEPVY GLLVDLWGKA GNVEKAWNWY HAMINAGLCP NVPTCNSLLS AFLRVHRLPD AYDLLQSMLE
701: LGLNPSLQTY TLLLSCCTEA QTSFDMSFCC ELMAVTRHPA HTFLLTMPAA GPDGQNVRDH VGSFLDLMHS EDRESKRGLV DSVVDFLHKS GLKEEAGSVW
801: EVAADKNVYP DAVREKSSSY WLINLHVMSD GTAIIALSRT LAWFRRQMLI SGIRPSRIDI VTGWGRRSRV TGSSMVRQAV QELLNMFGFP FLAQNGNSGC
901: FVGCGEPLSR WLVQPYVERM HLL
001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL
Arabidopsis Description
Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.