CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G012890.2	Barley	cytosol	45.25	89.15
Zm00001d031217_P003	Maize	mitochondrion	86.52	86.52
Os12t0638900-01	Rice	mitochondrion	81.95	81.37
TraesCS5A01G004000.1	Wheat	mitochondrion	76.32	76.68
TraesCS5D01G012800.1	Wheat	mitochondrion	74.79	74.97
CDX68166	Canola	cytosol	45.49	74.47
CDX85855	Canola	cytosol	42.79	74.19
TraesCSU01G073400.1	Wheat	mitochondrion	74.09	74.18
Bra003787.1-P	Field mustard	cytosol	42.32	73.37
HORVU5Hr1G000760.8	Barley	mitochondrion	71.86	71.53
CDX73110	Canola	cytosol	24.62	70.71
GSMUA_Achr8P15270_001	Banana	mitochondrion	57.33	58.08
Bra015895.1-P	Field mustard	mitochondrion	49.47	57.18
CDY45392	Canola	mitochondrion	49.47	57.18
AT1G74750.2	Thale cress	plastid	54.28	54.15
PGSC0003DMT400034282	Potato	mitochondrion	54.51	53.82
CDX83800	Canola	plastid	48.42	53.71
Bra016533.1-P	Field mustard	plastid	48.18	53.31
KRH54492	Soybean	mitochondrion	53.81	52.04
Bra025697.1-P	Field mustard	plastid	51.0	52.03
CDY19261	Canola	plastid	50.88	51.91
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	54.63	51.89
KRH63421	Soybean	plastid	53.93	51.22
CDX96689	Canola	plastid	47.6	51.01
AT1G18900.3	Thale cress	mitochondrion	52.76	50.79
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	54.87	50.7
CDY26713	Canola	plastid	50.41	50.06
KRH56975	Soybean	mitochondrion	51.23	49.89
CDX73109	Canola	plastid	21.57	44.12
EER93066	Sorghum	plastid	16.06	18.98
EER92639	Sorghum	plastid	14.89	18.38
KXG27099	Sorghum	mitochondrion	16.76	18.12

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8072878	UniProt:C5YT25	EnsemblPlants:EES17501	ProteinID:EES17501
ProteinID:EES17501.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0043231	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF268
InterPro:Pentatricopeptide_repeat	SMART:SM00463	EnsemblPlantsGene:SORBI_3008G190700	SUPFAM:SSF160443	SUPFAM:SSF48452	unigene:Sbi.5386
InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A88BA4	RefSeq:XP_002443663.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:62481733..62487502

Molecular Weight (calculated)

94745.9 Da

IEP (calculated)

8.520

GRAVY (calculated)

-0.409

Length

853 amino acids

Sequence
(BLAST)

001: MLRAKQLGTL TQCARSFYLN GSRCGSTDGA SCTCPEDETY APNRQTATAI EQKSHSTHRT SVKIQPPVQD VIGATGHPAP AVHATTSPPE KEPASSNRSN
101: RPHNRQQIIG SDYVQPSKQT ARSISQSGIA GAGVYSELVN FKSSSNNGSI DQAPQMGTNY SYQILSDSHS SNNRARNQLN FPEGKMTYNP SVNNEFGKGY
201: PRAGYAKPKQ SSSGPSVMVS SSPSQIRSQG HPGQPYAKYH SNHFNSDARR DEIQTRNPSG PNVFSGSGNK IQGSTGTIKA HSGAPQSSLR SLKSLRSVEQ
301: YYHTLQQMKW GPMTEHVLDN LHCKIDAFQA NQVLKLLHDH TVALGFFQWL KRQPGFKHDG HTYTTMIGIL GQARQFGVLK KLLDEMSRAH CKPTVVTYNR
401: IIHAYGRANY LKEAVKVFEE MQEAGYEPDR VTYCTLIDIH AKAGYLDIAM DLYGRMQEVG LSPDTFTYSA MVNCLGKGGQ LAAAYKLFCE MIENGCTPNL
501: VTYNIMIALQ AKARNYENVV KLYKDMQVAG FRPDKITYSI VMEVLGHCGH LDEAEAVFIE MRRDWAPDEP VYGLLVDLWG KAGNVDKALG WYQAMLQDGL
601: QPNVPTCNSL LSAFLKMNRF QDAYIVLQNM LAQGLVPSVQ TYTLLLSCCT EAQAQMGLCG QLMAITGHPA HMFLLYLPDA EPGGQNVRDH TGYFLDMMHS
701: EDRESKRGLM DAVIDFLHKS GLKEEAGLIW EVAAQKNVYP DSVREKSSSY WLINLHLMSE GTAVTALSRT LAWFHRQILT LGTGPERIDI VTGWGRRSRV
801: TGSSLVRQSV QKLLNLFEFP FFTTRGNTGC FVGCGEPLNK WLHNPYVERM HLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.