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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 3
  • mitochondrion 4
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:cytosol, mitochondrion, plastid
BaCelLo:plastid
iPSORT:plastid
MultiLoc:mitochondrion
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra025697.1-P Field mustard plastid 68.96 73.09
CDY19261 Canola plastid 68.4 72.49
HORVU0Hr1G012890.2 Barley cytosol 35.21 72.06
CDY26713 Canola plastid 69.53 71.71
Bra016533.1-P Field mustard plastid 58.58 67.32
CDX83800 Canola plastid 58.35 67.23
CDX96689 Canola plastid 59.37 66.08
AT1G74750.2 Thale cress plastid 63.09 65.38
PGSC0003DMT400034282 Potato mitochondrion 57.45 58.91
VIT_17s0000g05510.t01 Wine grape endoplasmic reticulum 59.37 58.57
KRH54492 Soybean mitochondrion 57.79 58.05
KRH63421 Soybean plastid 57.34 56.57
Solyc03g113380.2.1 Tomato cytosol, endoplasmic reticulum, plastid 57.79 55.47
KRH56975 Soybean mitochondrion 53.39 54.0
Zm00001d031217_P003 Maize mitochondrion 51.13 53.11
EES17501 Sorghum mitochondrion 50.79 52.76
TraesCS5D01G012800.1 Wheat mitochondrion 50.45 52.53
HORVU5Hr1G000760.8 Barley mitochondrion 50.68 52.39
TraesCSU01G073400.1 Wheat mitochondrion 50.11 52.11
TraesCS5A01G004000.1 Wheat mitochondrion 49.55 51.71
GSMUA_Achr8P15270_001 Banana mitochondrion 49.1 51.66
Os12t0638900-01 Rice mitochondrion 49.32 50.87
AT1G79490.1 Thale cress mitochondrion, plastid 18.17 19.26
AT4G16390.1 Thale cress plastid 14.33 18.09
AT5G46580.1 Thale cress plastid 14.22 17.72
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1EntrezGene:838471ProteinID:AEE29780.1ArrayExpress:AT1G18900EnsemblPlantsGene:AT1G18900
RefSeq:AT1G18900TAIR:AT1G18900RefSeq:AT1G18900-TAIR-GEnsemblPlants:AT1G18900.3TAIR:AT1G18900.3Unigene:At.15067
UniProt:F4IDY2GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:IPR002625InterPro:IPR002885
InterPro:IPR011990RefSeq:NP_001185030.1PFAM:PF01535PFAM:PF12854PFAM:PF13041PO:PO:0000037
PO:PO:0000293PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507PO:PO:0007057
PO:PO:0007611PO:PO:0007616PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010
PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046
PO:PO:0009047PO:PO:0009052PO:PO:0020100PO:PO:0025022PFscan:PS50828PFscan:PS51375
PANTHER:PTHR24015PANTHER:PTHR24015:SF268InterPro:Pentatricopeptide_repeatSMART:SM00463SUPFAM:SSF160443SUPFAM:SSF48452
InterPro:Smr_domInterPro:Smr_dom_sfTIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI0001E92B5BSEG:seg
Description
Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
Coordinates
chr1:+:6528984..6532614
Molecular Weight (calculated)
98063.5 Da
IEP (calculated)
8.849
GRAVY (calculated)
-0.287
Length
886 amino acids
Sequence
(BLAST)
001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHLVSHKLR LELDRMECLS SLLSSASQLY LPLVII
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.