Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22765 | Canola | cytosol | 68.66 | 87.48 |
| CDY42535 | Canola | cytosol | 68.38 | 87.11 |
| Bra038453.1-P | Field mustard | plastid | 85.47 | 86.08 |
| CDY32239 | Canola | plastid | 85.61 | 85.86 |
| Bra040576.1-P | Field mustard | plastid | 83.48 | 84.8 |
| CDY34461 | Canola | plastid | 80.48 | 80.71 |
| VIT_00s0194g00270.t01 | Wine grape | plastid | 68.95 | 69.04 |
| VIT_00s0194g00310.t01 | Wine grape | cytosol, extracellular | 21.23 | 67.42 |
| Solyc09g042290.1.1 | Tomato | cytosol | 38.6 | 66.42 |
| Solyc11g012670.1.1 | Tomato | nucleus | 61.4 | 62.55 |
| KRH51188 | Soybean | nucleus | 60.97 | 62.48 |
| PGSC0003DMT400034773 | Potato | plastid | 61.25 | 62.41 |
| KRH01964 | Soybean | nucleus | 60.4 | 59.55 |
| GSMUA_Achr7P26730_001 | Banana | plastid | 44.44 | 54.93 |
| KRH36594 | Soybean | plastid | 53.85 | 53.62 |
| KRH36593 | Soybean | plastid | 52.71 | 53.39 |
| KRH11577 | Soybean | plastid | 50.57 | 51.37 |
| KRH36591 | Soybean | plastid | 50.43 | 51.16 |
| HORVU2Hr1G122510.2 | Barley | cytosol | 26.64 | 49.08 |
| Os03t0215900-00 | Rice | plastid | 46.72 | 48.52 |
| TraesCS4D01G244400.1 | Wheat | plastid | 46.3 | 47.24 |
| EER92639 | Sorghum | plastid | 46.44 | 47.18 |
| Zm00001d028221_P001 | Maize | plastid | 46.3 | 47.03 |
| TraesCS4B01G245000.1 | Wheat | plastid | 45.58 | 46.44 |
| TraesCS4A01G079200.1 | Wheat | plastid | 45.3 | 46.22 |
| HORVU4Hr1G067600.1 | Barley | nucleus | 43.45 | 43.63 |
| Zm00001d025264_P001 | Maize | mitochondrion, peroxisome | 19.37 | 37.16 |
| AT5G46580.1 | Thale cress | plastid | 34.47 | 34.04 |
| KRH11579 | Soybean | plastid | 48.72 | 33.66 |
| KRH11578 | Soybean | plastid | 47.58 | 32.36 |
| KRH36592 | Soybean | plastid | 47.01 | 32.23 |
| AT1G79490.1 | Thale cress | mitochondrion, plastid | 18.66 | 15.67 |
| AT1G18900.3 | Thale cress | mitochondrion | 18.09 | 14.33 |
| AT1G74750.2 | Thale cress | plastid | 16.95 | 13.92 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:827333 | ProteinID:AEE83741.1 | EMBL:AK118908 | ArrayExpress:AT4G16390 |
| EnsemblPlantsGene:AT4G16390 | RefSeq:AT4G16390 | TAIR:AT4G16390 | RefSeq:AT4G16390-TAIR-G | EnsemblPlants:AT4G16390.1 | TAIR:AT4G16390.1 |
| Unigene:At.45811 | ProteinID:CAB10416.1 | ProteinID:CAB78681.1 | ProteinID:CAC01928.1 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0006139 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009451 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009658 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0031425 | GO:GO:0045727 | GO:GO:0090305 | InterPro:IPR002625 |
| InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_193372.6 | PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 |
| PFAM:PF17177 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | InterPro:PPR_long | PFscan:PS50828 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF437 |
| InterPro:Pentatricopeptide_repeat | UniProt:Q8GWE0 | SMART:SM00463 | SUPFAM:SSF48452 | SUPFAM:SSF81901 | Symbol:SVR7 |
| InterPro:Smr_dom | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI0001A7B0E7 | SEG:seg | : |
Description
P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
Coordinates
chr4:+:9257869..9260328
Molecular Weight (calculated)
78246.8 Da
IEP (calculated)
6.130
GRAVY (calculated)
-0.198
Length
702 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.