CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 8
cytosol 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01964	Soybean	nucleus	90.51	87.08
Solyc09g042290.1.1	Tomato	cytosol	41.61	69.85
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	22.19	68.78
CDY22765	Canola	cytosol	55.18	68.6
CDY42535	Canola	cytosol	55.18	68.6
VIT_00s0194g00270.t01	Wine grape	plastid	68.47	66.9
Solyc11g012670.1.1	Tomato	nucleus	64.38	64.01
PGSC0003DMT400034773	Potato	plastid	63.5	63.13
CDY34461	Canola	plastid	63.8	62.43
KRH36594	Soybean	plastid	63.36	61.56
Bra038453.1-P	Field mustard	plastid	62.63	61.55
Bra040576.1-P	Field mustard	plastid	62.04	61.51
CDY32239	Canola	plastid	62.77	61.43
AT4G16390.1	Thale cress	plastid	62.48	60.97
KRH36591	Soybean	plastid	60.29	59.68
KRH36593	Soybean	plastid	60.29	59.6
KRH11577	Soybean	plastid	59.71	59.19
GSMUA_Achr7P26730_001	Banana	plastid	46.28	55.81
HORVU2Hr1G122510.2	Barley	cytosol	28.76	51.71
Os03t0215900-00	Rice	plastid	50.37	51.04
TraesCS4A01G079200.1	Wheat	plastid	50.22	50.0
EER92639	Sorghum	plastid	50.22	49.78
TraesCS4B01G245000.1	Wheat	plastid	49.93	49.64
Zm00001d028221_P001	Maize	plastid	49.78	49.35
TraesCS4D01G244400.1	Wheat	plastid	49.05	48.84
HORVU4Hr1G067600.1	Barley	nucleus	48.32	47.35
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	21.46	40.16
KRH11579	Soybean	plastid	56.93	38.39
KRH36592	Soybean	plastid	55.47	37.11
KRH11578	Soybean	plastid	54.31	36.05
KRH58221	Soybean	cytosol	35.47	34.13
KRH04318	Soybean	cytosol	31.39	32.82
KRH57615	Soybean	cytosol	15.91	14.97
KRH56975	Soybean	mitochondrion	18.54	14.5
KRG94011	Soybean	plastid	17.08	14.3
KRH54492	Soybean	mitochondrion	18.1	14.06
KRH63421	Soybean	plastid	18.1	13.81

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100795559	MapMan:35.1	EMBL:ACUP02004730	EnsemblPlantsGene:GLYMA_07G267500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	UniProt:I1KNK8	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:KRH51188	ProteinID:KRH51188	ProteinID:KRH51188.1	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002339094	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:44075019..44077494

Molecular Weight (calculated)

76759.7 Da

IEP (calculated)

6.289

GRAVY (calculated)

-0.248

Length

685 amino acids

Sequence
(BLAST)

001: MAYNLCSSPS SLFHDLPSIS SSSSSRKFKL RNLSSSSLTP HSKTLLHVSL HEHEPIPEHL PPDAKSSSSS KSNYIWVNPR SPRAKQLESR SYDARYTSLV
101: NLAHSLDSCN PSQEDVSLVL KDLGDRVIEQ DAVIVINNMS NSRVVPFVLN YFQRRIRPTR EVILYNVTLK VFRKSKDLDA MEKLFDEMLQ RGVRPDNVTF
201: STIISCARIC SLPNKAVEWF EKMSSFGCEP DDVTYSAMID AYGRAGNIDM ALRLYDRART EKWRLDTVTF STLIKMYGLA GNYDGCLNVY QEMKVLGVKP
301: NMVIYNTLLD AMGRAKRPWQ AKSIYTEMTN NGFSPNWVTY ASLLRAYGRG RYSEDALFVY KEMKEKGMEM NTHLYNTLLA MCADLGLANE AFEIFEDMKT
401: SATCLCDSWT FSSLITIYSC TGNVSEAERM LNEMIESGSQ PTIFVLTSLV QCYGKVGRTD DVVKTFNQLL DLGISPDDRF CGCLLNVMTQ TPKEELGKLN
501: DCVKKANPKL GSVVRYLVEG LEEGGGEFKK EASELFNSIA DEVKKPFCNS LIDLCVNLNL LDKACELLDL GLTLEIYTDV QSKSQTQWSL HLKSLSLGAS
601: LTALHAWIND LSKTLESGED LPPLLGINTG HGKHRYSDKG LASVVESHLN ELNAPFHEAP DKAGWFLTTQ VAAKSWLESR ELVTA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.