CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22765	Canola	cytosol	70.0	88.93
CDY42535	Canola	cytosol	69.57	88.38
CDY32239	Canola	plastid	87.71	87.71
AT4G16390.1	Thale cress	plastid	80.71	80.48
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	21.57	68.33
Solyc09g042290.1.1	Tomato	cytosol	38.71	66.42
VIT_00s0194g00270.t01	Wine grape	plastid	65.29	65.19
KRH51188	Soybean	nucleus	62.43	63.8
Solyc11g012670.1.1	Tomato	nucleus	61.29	62.26
PGSC0003DMT400034773	Potato	plastid	60.43	61.39
KRH01964	Soybean	nucleus	62.14	61.1
KRH36594	Soybean	plastid	56.14	55.74
GSMUA_Achr7P26730_001	Banana	plastid	44.29	54.58
KRH36593	Soybean	plastid	53.43	53.97
KRH11577	Soybean	plastid	52.57	53.26
KRH36591	Soybean	plastid	51.86	52.46
HORVU2Hr1G122510.2	Barley	cytosol	28.29	51.97
Os03t0215900-00	Rice	plastid	48.86	50.59
EER92639	Sorghum	plastid	49.29	49.93
Zm00001d028221_P001	Maize	plastid	48.71	49.35
TraesCS4B01G245000.1	Wheat	plastid	48.14	48.91
TraesCS4D01G244400.1	Wheat	plastid	48.0	48.84
TraesCS4A01G079200.1	Wheat	plastid	47.57	48.4
HORVU4Hr1G067600.1	Barley	nucleus	46.43	46.49
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	19.86	37.98
KRH11579	Soybean	plastid	50.29	34.65
CDY33481	Canola	plastid	34.71	34.18
CDX77673	Canola	plastid	34.43	33.9
KRH36592	Soybean	plastid	48.29	33.01
KRH11578	Soybean	plastid	48.43	32.85
CDX85855	Canola	cytosol	15.14	21.54
CDX68166	Canola	cytosol	16.0	21.5
CDX73110	Canola	cytosol	7.29	17.17
CDX83800	Canola	plastid	18.29	16.64
CDX96689	Canola	plastid	18.71	16.46
CDY45392	Canola	mitochondrion	17.29	16.4
CDX73109	Canola	plastid	9.14	15.35
CDX67993	Canola	mitochondrion, plastid	17.57	15.0
CDX79321	Canola	mitochondrion, plastid	17.43	14.79
CDY19261	Canola	plastid	17.14	14.35
CDY26713	Canola	plastid	16.86	13.74

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078H9N2	EnsemblPlants:CDY34461	ProteinID:CDY34461	ProteinID:CDY34461.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00056567001	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EEA7CB	SEG:seg

Description

BnaC01g21720DBnaC01g21720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H9N2]

Coordinates

chrLK032334:+:310473..312575

Molecular Weight (calculated)

78316.7 Da

IEP (calculated)

6.032

GRAVY (calculated)

-0.269

Length

700 amino acids

Sequence
(BLAST)

001: MSFHLYSSPS SLLHDPHPLC NLLSAHPKST PRSFLSTYNP NSPPFHSRNL LQTSHVSLQE SLPHETQIEK PKLDANPPGP TPKRYAWVNP NSPRASQLRR
101: KSYDSRYSSL IKLAESLDAC PPNEADVSDE LTKFGSNLFE QDAVVTLNNM TNPETAPLFL NHLLGTLKPT REVILYNVTM KVFRKSKDLE RSEKLFDEML
201: QRGVKPDNAT FTTLISCARQ CGLPKRAVEW FEKMPSFDCE PDNVTLATMI DAYGRAGNVE MALSLYDRAR TEKWRIDPVT FSTLIKIYGY SGNYDGCLNI
301: YEEMKSLGVK PNLVIYNRLL DSMGKAKRPW QATIIHKDLI SNGFEPNWST YAALIRAYGR ARYGDDALVI YRQMKGKGME LTVILYNTLL SMCADIGYVD
401: EAFEIFQDMK SSGTCDPDSW TFSSLVTVYS CCGRVSEAEA ALREMREAGF EPTLFVLTSL IQCYGKAKQV DDVVRTFEQV LELGIEPDDR FCGCLLNVMT
501: QTPKEEIAKL IGCVEKAKPK LGRVVKMLVE EESCEEGVFK KEASELIDSI GSDVNKAYLN CLIDLCVNLN KLEKACEILQ LGLEYDIYSG LQSKSATQWS
601: LHLKSLSLGA ALTALHVWMN DLSEAALVSG EEFPPLLGIN TGHGKHKYSD KGLAAVFESH LKELDAPFHE APDKVGWFLT TSVAAKAWLE SRRLSGEVSA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.