CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85855	Canola	cytosol	94.24	99.8
Bra003787.1-P	Field mustard	cytosol	93.47	98.98
CDX73110	Canola	cytosol	50.48	88.55
HORVU0Hr1G012890.2	Barley	cytosol	60.65	72.98
CDY45392	Canola	mitochondrion	90.59	63.96
AT1G74750.2	Thale cress	plastid	93.47	56.96
CDX83800	Canola	plastid	83.11	56.31
CDY19261	Canola	plastid	87.72	54.67
CDX96689	Canola	plastid	81.57	53.39
CDY26713	Canola	plastid	85.8	52.04
PGSC0003DMT400034282	Potato	mitochondrion	82.73	49.88
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	83.88	48.66
KRH54492	Soybean	mitochondrion	81.57	48.19
KRH63421	Soybean	plastid	81.19	47.1
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	82.73	46.7
KRH56975	Soybean	mitochondrion	78.31	46.58
EES17501	Sorghum	mitochondrion	74.47	45.49
Zm00001d031217_P003	Maize	mitochondrion	73.7	45.02
GSMUA_Achr8P15270_001	Banana	mitochondrion	72.74	45.01
TraesCS5D01G012800.1	Wheat	mitochondrion	72.55	44.42
TraesCS5A01G004000.1	Wheat	mitochondrion	72.36	44.41
TraesCSU01G073400.1	Wheat	mitochondrion	72.55	44.37
Os12t0638900-01	Rice	mitochondrion	72.74	44.12
HORVU5Hr1G000760.8	Barley	mitochondrion	72.36	43.99
CDX73109	Canola	plastid	33.97	42.45
CDY42535	Canola	cytosol	21.5	20.33
CDY22765	Canola	cytosol	21.5	20.33
CDY32239	Canola	plastid	22.07	16.43
CDY34461	Canola	plastid	21.5	16.0
CDY33481	Canola	plastid	21.31	15.61
CDX77673	Canola	plastid	21.31	15.61
CDX79321	Canola	mitochondrion, plastid	24.18	15.27
CDX67993	Canola	mitochondrion, plastid	23.99	15.24

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX68166	ProteinID:CDX68166	ProteinID:CDX68166.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00099421001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EEA5DE	SEG:seg	:	:

Description

BnaA07g22060D

Coordinates

chrLK031787:-:4209306..4210871

Molecular Weight (calculated)

58876.1 Da

IEP (calculated)

7.509

GRAVY (calculated)

-0.170

Length

521 amino acids

Sequence
(BLAST)

001: MDNYTNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GEINKLLNEM VRDGCQPNTV TYNRLIHSYG RANYLREAMN VFNQMQEAGC EPDRVTYCTL
101: IDIHAKAGFL DIAMDMYQRM QAAGLSPDTF TYSVIINCLG KAGHLPAAHR LFCEMVGQGC TPNLVTFNIM IALHAKARNY QSALKLYRDM KDAGFQPDKV
201: TYSIVMEVLG HCGYLEEAEA VFTEMQRKNW VPDEPVYGLL VDLWGKAGNV DKAWQWYQAM LHAGLRPNVP TCNSLLSTFL RVHRLSEAYN LLQSMLALGL
301: QSSLQTYTLL LSCCTDARSK FDLGFCGQLM AVSGHPAHMF LLKMPPAGTD GQNVREHVSN FLDYMHSEDR ESKRGLMDAV VDFLHKSGLK EEAGSVWEVA
401: AFKNVYPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLVSGE CPSRIDIVTG WGRRSRVTGT SMVRQAVEEL LNMFNFPFFT ENGNSGCFVG
501: CGEPLKKWLL ESSYVERMHL L

Best Arabidopsis Sequence Match ( AT1G74750.2 )
(BLAST)

001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.