CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67993	Canola	mitochondrion, plastid	92.85	93.41
AT1G79490.1	Thale cress	mitochondrion, plastid	86.67	85.53
KRH57615	Soybean	cytosol	69.94	79.26
PGSC0003DMT400067470	Potato	mitochondrion	73.21	76.07
VIT_12s0028g00090.t01	Wine grape	plastid	73.94	76.06
Solyc08g078150.1.1	Tomato	nucleus	73.09	75.94
KRG94011	Soybean	plastid	72.85	73.47
GSMUA_Achr11P...	Banana	mitochondrion	55.03	60.78
TraesCS2D01G422200.1	Wheat	mitochondrion	52.97	56.31
Os04t0612800-01	Rice	mitochondrion	53.21	56.07
KXG27099	Sorghum	mitochondrion	53.09	55.51
TraesCS2A01G424400.1	Wheat	mitochondrion	51.76	55.03
Zm00001d002345_P001	Maize	mitochondrion	52.12	54.64
TraesCS2B01G444000.1	Wheat	plastid	53.21	54.2
HORVU2Hr1G099330.11	Barley	mitochondrion	48.97	52.06
CDX85855	Canola	cytosol	14.55	24.39
CDX68166	Canola	cytosol	15.27	24.18
CDY42535	Canola	cytosol	14.06	21.05
CDY22765	Canola	cytosol	14.06	21.05
CDX73110	Canola	cytosol	7.39	20.54
CDY45392	Canola	mitochondrion	17.7	19.78
CDY33481	Canola	plastid	16.48	19.13
CDX77673	Canola	plastid	16.48	19.13
CDX96689	Canola	plastid	18.3	18.97
CDX83800	Canola	plastid	17.58	18.86
CDY19261	Canola	plastid	18.67	18.42
CDY26713	Canola	plastid	19.03	18.28
CDY32239	Canola	plastid	15.39	18.14
CDX73109	Canola	plastid	8.85	17.51
CDY34461	Canola	plastid	14.79	17.43

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX79321	ProteinID:CDX79321	ProteinID:CDX79321.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00131998001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF326	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	InterPro:Smr_dom
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EAF086	SEG:seg	:	:

Description

BnaC06g19820D

Coordinates

chrLK031817:+:1343738..1346215

Molecular Weight (calculated)

92869.6 Da

IEP (calculated)

9.395

GRAVY (calculated)

-0.058

Length

825 amino acids

Sequence
(BLAST)

001: MLRLRTAKSI PRNVISTLHR STTVSAETPL LPPSPQSPSL AANLHSPSIR LLRSFTVCSV SRNTVTNQSP SLFRRFCSDE SGTSWTEEVE YLDESGSVIH
101: SGKGIRSVEP GVDDHVMVGG LKKPLMNASA VAKIVEVVQR WKWGPELETH LDKLQFLPNM VHVKQSLKIV EDVDAGLSLF RWVKKQPWYV PCDECYVVLF
201: DGLNKGKDFE GIQKLFEEMV QDSGRSHHHH SLGAYNQVIQ YLAKAEKLEV AFCCFKKAQD CGCKIDTQTY NNLMMLFLNK GLPYKAFEIY ESMEKTDSLL
301: DGSTYELIIP SLAKSGRLDA AFKLFQQMKE RKLRPSFSVF ASLVDSMGKA GRLDTSMKVY MEMQGYGHRP SATMFVSLID SYAKAGKLDT ALRLWDEMKS
401: SGFRPNFGLY TMIIESHAKS GKLEVAMSVF KDMEKAGFLP TPSTYSCLLE MHAGSGQVDS AMKIYNSMTN AGLRPGLSSY ISLLTLLANK RLVDVAGKIL
501: LEMKAMGYSV DVCASDVLMI YIKDASVDLA LKWLRFMGSS GIKTNNFIIR QLFESCMKNG LYDSARPLLE TLVHSAGKVD LVLYTSILAH LVRCQDEDKE
601: RQLMSILSTT KHKAHAFMCG LFTGPEQRKQ PVLTFVREFY QGIDYELEEG AARYFVNVLL NYLVLMGQIN RARCVWKVAY ENKLFPKAIV FDQHIAWSLD
701: VRNLSVGAAL IAVVHTLHRF RKRMLYYGVV PRRIKLVTGP TLKIVIAQML SSVESPFEVS KVVLRAPGDS VMEWFKKPIV QQFLLNEIPS RADILMHKLN
801: VMFPSSAPEL RSMFPPKPIM SSKSF

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.