CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85855	Canola	cytosol	88.55	53.46
CDX68166	Canola	cytosol	88.55	50.48
HORVU0Hr1G012890.2	Barley	cytosol	68.01	46.65
CDY45392	Canola	mitochondrion	96.97	39.02
CDX83800	Canola	plastid	80.47	31.08
AT1G74750.2	Thale cress	plastid	86.87	30.18
CDX96689	Canola	plastid	77.1	28.77
CDY19261	Canola	plastid	79.8	28.35
CDY26713	Canola	plastid	77.44	26.78
PGSC0003DMT400034282	Potato	mitochondrion	76.77	26.39
KRH54492	Soybean	mitochondrion	78.11	26.3
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	79.46	26.28
KRH63421	Soybean	plastid	77.44	25.61
KRH56975	Soybean	mitochondrion	74.07	25.11
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	77.1	24.81
GSMUA_Achr8P15270_001	Banana	mitochondrion	70.03	24.7
EES17501	Sorghum	mitochondrion	70.71	24.62
TraesCS5D01G012800.1	Wheat	mitochondrion	69.02	24.09
TraesCSU01G073400.1	Wheat	mitochondrion	69.02	24.06
Zm00001d031217_P003	Maize	mitochondrion	69.02	24.03
TraesCS5A01G004000.1	Wheat	mitochondrion	68.69	24.03
Os12t0638900-01	Rice	mitochondrion	69.36	23.98
HORVU5Hr1G000760.8	Barley	mitochondrion	68.69	23.8
CDY42535	Canola	cytosol	17.51	9.44
CDY22765	Canola	cytosol	17.51	9.44
CDY33481	Canola	plastid	19.53	8.16
CDX77673	Canola	plastid	19.53	8.16
CDY32239	Canola	plastid	17.85	7.57
CDX67993	Canola	mitochondrion, plastid	20.54	7.44
CDX79321	Canola	mitochondrion, plastid	20.54	7.39
CDY34461	Canola	plastid	17.17	7.29
CDX73109	Canola	plastid	1.01	0.72

Protein Annotations

EnsemblPlants:CDX73110	EnsemblPlantsGene:GSBRNA2T00103579001	InterPro:IPR002625	InterPro:IPR002885	InterPro:Pentatricopeptide_repeat	InterPro:Smr_dom
InterPro:Smr_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
ProteinID:CDX73110	ProteinID:CDX73110.1	SEG:seg	SMART:SM00463	SUPFAM:SSF160443	TIGRFAMs:TIGR00756
UniParc:UPI0004EE961F	MapMan:35.1	:	:	:	:

Description

BnaC06g35580D

Coordinates

chrLK031797:+:2167041..2167934

Molecular Weight (calculated)

33418.1 Da

IEP (calculated)

6.839

GRAVY (calculated)

-0.156

Length

297 amino acids

Sequence
(BLAST)

001: MERENWVPDE HVYGLIVDLW GKAGDVEKAW RWYQAMLHAG VRPNVPTCNS LLSTLLRGHR LSEAYNLLQS MMAFGLQSSL QTYTLLLSCC TEARSNFDLG
101: FCGQLMAVSG HPAHTFLLKM PPAGSDNGQK VRDHVSSFLD YMHSEDRESK RGLIDAIVEF LHKSGLKEEA GSVWEVAAVK NVYPDALREK SCSYWLINLH
201: VMSEGTAVTA LSRTLAWFRK QMLVSGECPS RIDIVTGWGR RSRVTGSSMV RQAVEELLNV FNFPFFTENG NSGCFVGCGE PLKNWLSESY VERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.