Factsheet for HORVU0Hr1G012890.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73110	Canola	cytosol	46.65	68.01
CDX85855	Canola	cytosol	72.98	64.23
Bra003787.1-P	Field mustard	cytosol	72.06	63.41
CDX68166	Canola	cytosol	72.98	60.65
HORVU5Hr1G000760.8	Barley	mitochondrion	97.69	49.36
TraesCSU01G073400.1	Wheat	mitochondrion	96.77	49.18
TraesCS5D01G012800.1	Wheat	mitochondrion	96.54	49.12
TraesCS5A01G004000.1	Wheat	mitochondrion	96.3	49.12
Os12t0638900-01	Rice	mitochondrion	89.84	45.29
EES17501	Sorghum	mitochondrion	89.15	45.25
Zm00001d031217_P003	Maize	mitochondrion	88.68	45.02
Bra015895.1-P	Field mustard	mitochondrion	70.67	41.46
CDY45392	Canola	mitochondrion	70.67	41.46
GSMUA_Achr8P15270_001	Banana	mitochondrion	78.75	40.5
Bra016533.1-P	Field mustard	plastid	69.75	39.17
CDX83800	Canola	plastid	69.52	39.14
CDY19261	Canola	plastid	72.98	37.8
Bra025697.1-P	Field mustard	plastid	72.98	37.8
CDX96689	Canola	plastid	68.59	37.31
AT1G74750.2	Thale cress	plastid	73.67	37.31
PGSC0003DMT400034282	Potato	mitochondrion	74.13	37.15
CDY26713	Canola	plastid	71.82	36.2
KRH54492	Soybean	mitochondrion	73.67	36.17
KRH63421	Soybean	plastid	73.9	35.63
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	73.44	35.41
AT1G18900.3	Thale cress	mitochondrion	72.06	35.21
KRH56975	Soybean	mitochondrion	71.13	35.16
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	73.67	34.56
CDX73109	Canola	plastid	17.09	17.75
HORVU2Hr1G122510.2	Barley	cytosol	14.32	16.27
HORVU5Hr1G124070.6	Barley	plastid	22.4	13.38
HORVU4Hr1G067600.1	Barley	nucleus	20.79	12.88
HORVU2Hr1G099330.11	Barley	mitochondrion	22.4	12.5

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287E0I5	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:HORVU0Hr1G012890	EnsemblPlants:HORVU0Hr1G012890.2	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13041
PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat
SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000B466564	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrchrUn:+:74286685..74288370

Molecular Weight (calculated)

47583.6 Da

IEP (calculated)

6.105

GRAVY (calculated)

-0.040

Length

433 amino acids

Sequence
(BLAST)

001: MEGAGYQPDR VTYCTLIDIH AKSGYLEVAM DLYGRMQEVG LSPDTFTYSA MVNCLGKGGQ LAAAYKLFCE MIDNGCTPNL VTYNIIIALQ AKARNYDNVV
101: KLYRDMQIAG FRPDKITYSI VMEVLGHCGH LDEAEAVFLE MRRDWAPDEP VYGLLVDLWG KAGNVDKALG WYHAMLQDGL QPNVPTCNSL LSAXXXXXXX
201: XDAYGVLQNM LAQGLVPSLQ TYTLLLSCCT DAHAQMGLCC QLMAITGHPA HMFLLYLPDA EPGGENVRDH ARYFLDMMHS EDRESKRGIM DAVIDFLHKS
301: GLKEEAGFIW EVAAQRNVYP DSVREKSSSY WLINLHLMSE GTAVTALSRT LAWFHRQMLL MGSCPERIDI VTGWGRRSRV TGSSLVRQSI EKLLHLFQFP
401: LFAARGNTGC FVGCGEPLSQ WLHNPYVERM HLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.