Factsheet for Bra015895.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 5
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45392	Canola	mitochondrion	100.0	100.0
Bra003787.1-P	Field mustard	cytosol	60.16	90.24
HORVU0Hr1G012890.2	Barley	cytosol	41.46	70.67
AT1G74750.2	Thale cress	plastid	74.8	64.56
Bra016533.1-P	Field mustard	plastid	64.77	62.0
Bra025697.1-P	Field mustard	plastid	66.53	58.73
PGSC0003DMT400034282	Potato	mitochondrion	63.82	54.51
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	65.04	53.45
KRH54492	Soybean	mitochondrion	63.01	52.72
KRH63421	Soybean	plastid	62.74	51.56
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	64.23	51.35
KRH56975	Soybean	mitochondrion	60.16	50.68
GSMUA_Achr8P15270_001	Banana	mitochondrion	57.18	50.12
EES17501	Sorghum	mitochondrion	57.18	49.47
Zm00001d031217_P003	Maize	mitochondrion	56.64	49.0
TraesCS5A01G004000.1	Wheat	mitochondrion	55.83	48.53
TraesCS5D01G012800.1	Wheat	mitochondrion	55.83	48.41
TraesCSU01G073400.1	Wheat	mitochondrion	55.83	48.36
Os12t0638900-01	Rice	mitochondrion	56.23	48.31
HORVU5Hr1G000760.8	Barley	mitochondrion	55.56	47.84
Bra025013.1-P	Field mustard	plastid	17.75	18.42
Bra038453.1-P	Field mustard	plastid	17.21	18.22
Bra040576.1-P	Field mustard	plastid	16.94	18.09
Bra003609.1-P	Field mustard	mitochondrion, plastid	19.51	17.45

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra015895	EnsemblPlants:Bra015895.1	EnsemblPlants:Bra015895.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4DHB8
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002541E8B	SEG:seg	:	:

Description

AT1G74750 (E=3e-297) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA07:+:20327266..20329482

Molecular Weight (calculated)

82009.8 Da

IEP (calculated)

8.032

GRAVY (calculated)

-0.294

Length

738 amino acids

Sequence
(BLAST)

001: MIRAKQISNL SSSARSFFLG GTRSSAADGN SCTSSAEDES SVLRRHRTRP EAVHTGNRVF TRPSPLHLHV SPPVLPVKPD PANRKIPLPD GTEVSMVDHT
101: LPITSVKASG REHLGEVYTT SASKDSSERA PVNASPGTKQ ASNDVSHDLT KTTASGKRKC GYDPSGEMMR VTPAPRHVIE NVSSILRRFK WGPAAEEALH
201: NSGFKMDAYQ ANQVLKQIDN YANALGFFYW LKTQPGFKHD EHTYTTMVGN LGRAKQFGEI NNLLNEMVRD GCQPNTVTYN RLIHSYGRAN YLKEAMNVFT
301: QMQEAGCEPD RVTYCTLIDI HAKAGFLDIA MDMYQRMQSA GLSPDTFTYS VIINCLGKSG HLASAHRLFC EMVGQGCTPS LVTFNIMIAL HAKARNYQSA
401: LKLYREMKAA GFRPDKVTYS IVMEVLGHCG FLEEAEGVFT EMERESWVPD EHVYGLLVDL WGKAGNVEKA WRWYQAMLHA GVRPNVPTCN SLLSTLLRGH
501: RLSEAYNLLQ SMVAFGLQSS LQTYTLLLSC CTEARSNFDL GFCGQLMAVS GHPAHTFLLK MPPAGSDNGQ KVRDHVSSFL DYMHSEDRES KRGLIDAVVE
601: FLHKSGLKEE AGSVWEVAAV KNVYSDALRE KSCSYWLINL HVMSEGTAVT ALSRTLAWFR KQMLVSGECP SRIDIVTGWG RRSRVTGSSM VRQAVEELLN
701: VFNFPFFTEN GNSGCFVGCG EPLKNWLSES YVERMHLL

Best Arabidopsis Sequence Match ( AT1G74750.2 )
(BLAST)

001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.