Factsheet for Bra016533.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96689	Canola	plastid	99.35	96.23
Bra003787.1-P	Field mustard	cytosol	52.66	82.52
HORVU0Hr1G012890.2	Barley	cytosol	39.17	69.75
Bra015895.1-P	Field mustard	mitochondrion	62.0	64.77
Bra025697.1-P	Field mustard	plastid	68.87	63.52
AT1G18900.3	Thale cress	mitochondrion	67.32	58.58
KRH54492	Soybean	mitochondrion	59.66	52.15
PGSC0003DMT400034282	Potato	mitochondrion	58.24	51.97
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	60.05	51.56
KRH63421	Soybean	plastid	59.27	50.89
KRH56975	Soybean	mitochondrion	57.07	50.23
GSMUA_Achr8P15270_001	Banana	mitochondrion	54.09	49.52
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	58.37	48.75
EES17501	Sorghum	mitochondrion	53.31	48.18
Zm00001d031217_P003	Maize	mitochondrion	53.31	48.18
TraesCSU01G073400.1	Wheat	mitochondrion	52.92	47.89
TraesCS5D01G012800.1	Wheat	mitochondrion	52.79	47.83
TraesCS5A01G004000.1	Wheat	mitochondrion	52.53	47.7
HORVU5Hr1G000760.8	Barley	mitochondrion	52.79	47.49
Os12t0638900-01	Rice	mitochondrion	52.66	47.26
Bra038453.1-P	Field mustard	plastid	17.38	19.23
Bra040576.1-P	Field mustard	plastid	16.6	18.52
Bra025013.1-P	Field mustard	plastid	16.86	18.28
Bra003609.1-P	Field mustard	mitochondrion, plastid	18.81	17.58

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra016533	EnsemblPlants:Bra016533.1	EnsemblPlants:Bra016533.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
UniProt:M4DJ55	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	SUPFAM:SSF81901
InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002546F33	SEG:seg

Description

AT1G18900 (E=9e-294) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA08:-:18907511..18909826

Molecular Weight (calculated)

85584.7 Da

IEP (calculated)

9.301

GRAVY (calculated)

-0.304

Length

771 amino acids

Sequence
(BLAST)

001: MTPAKQISKL SSSARSFILN GSRLSAASGN SRAHTDDEPF VSRRQQLRNQ AAHTGKTQSS IVLNPSVVAS ILPGETSKKK VDDSARSSQS SSHSVSYASA
101: VIKEEEEASS APFGDQILRA GVKAVNILSD LANCKLPSFD RESEVSGLLP KAFMVDPTRP ITSVKSSNVK AKAYPGSSSK ESKTRNPCRS FQGSKEAARG
201: QHCNTRHVVE NVCSVLKSFR WGPAAEEALE KLRTEKRIVM SPRQANQVLM QMNDYGKALG FFYWLKRQPD FKHDDYTYTT MLGSLGRAKQ FGAINKLLNE
301: MVREGCQPTT VTYNRLIHSY GRANYLKEAM NVFNQMQKSG CEPDRVTYCT LIDIHAKAGF LDIAMDIHQR MNAAGIETDT FTYSLIINCL GKAGRLPAAH
401: KLFCEMVDKG CAPNLVTYNI MIDLHAKARN YQSALKLYRD MQSAGFKPDK VTYSIVMVVL GHCGYLEEAE GVFKKMEEEN WVPDEPVYGL LVDLWGKAGN
501: VEKAWRWYQE MLRAGVLPNV PTFNSLLSSF LRVNKVTEAS ELLQNMLALG LRPSLQTYTL LLSCCTDGRS KLDMGFCGQL MARTGHPAHT FLLKMPSAGP
601: DGQNVRNHAK SFLDLMHSED RESKRGLVDA VVDFLHKSGL KEEAGSVWEV AAQKNVFPDA LREKSRSYWL INLHVMSEGT AVTALARTLA WFRKQMLVSG
701: CGPARIDIVT GWGRRSRVTG SSMVRQAVEE LLSIFGSPFY TESGNSGCFV GCGEALNRWL LQSYVERMHL L

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.