Factsheet for PGSC0003DMT400034282

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	97.34	91.12
CDX85855	Canola	cytosol	47.34	83.13
CDX68166	Canola	cytosol	49.88	82.73
Bra003787.1-P	Field mustard	cytosol	46.88	82.32
CDX73110	Canola	cytosol	26.39	76.77
HORVU0Hr1G012890.2	Barley	cytosol	37.15	74.13
Bra015895.1-P	Field mustard	mitochondrion	54.51	63.82
CDY45392	Canola	mitochondrion	54.51	63.82
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	63.77	61.36
CDY19261	Canola	plastid	58.68	60.65
KRH54492	Soybean	mitochondrion	61.69	60.43
Bra025697.1-P	Field mustard	plastid	58.33	60.29
KRH56975	Soybean	mitochondrion	60.3	59.47
AT1G74750.2	Thale cress	plastid	58.56	59.18
KRH63421	Soybean	plastid	61.23	58.91
Bra016533.1-P	Field mustard	plastid	51.97	58.24
CDY26713	Canola	plastid	57.75	58.09
CDX83800	Canola	plastid	51.5	57.87
AT1G18900.3	Thale cress	mitochondrion	58.91	57.45
CDX96689	Canola	plastid	51.39	55.78
GSMUA_Achr8P15270_001	Banana	mitochondrion	53.7	55.11
EES17501	Sorghum	mitochondrion	53.82	54.51
TraesCS5D01G012800.1	Wheat	mitochondrion	53.36	54.17
TraesCSU01G073400.1	Wheat	mitochondrion	53.01	53.76
HORVU5Hr1G000760.8	Barley	mitochondrion	53.24	53.68
Zm00001d031217_P003	Maize	mitochondrion	52.89	53.58
TraesCS5A01G004000.1	Wheat	mitochondrion	52.55	53.47
Os12t0638900-01	Rice	mitochondrion	52.66	52.97
CDX73109	Canola	plastid	24.07	49.88
PGSC0003DMT400034773	Potato	plastid	15.16	19.01
PGSC0003DMT400067470	Potato	mitochondrion	16.9	18.39
PGSC0003DMT400045128	Potato	plastid	14.7	17.86
PGSC0003DMT400085913	Potato	plastid	14.7	17.86

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102591791	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M1B0F3	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400013180	PGSC:PGSC0003DMG400013180	EnsemblPlants:PGSC0003DMT400034282	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom
InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000296752B	RefSeq:XP_006367706.1	RefSeq:XP_015161089.1

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400013180]

Coordinates

chr3:-:53321004..53325909

Molecular Weight (calculated)

95779.5 Da

IEP (calculated)

8.464

GRAVY (calculated)

-0.280

Length

864 amino acids

Sequence
(BLAST)

001: MLRAKQLGTL SQSARSFFLG GSRCSAGDGS SCTCSEDDTC ISKRPQTRND VRHPQISSNL VSKSSVGVGA LLSGDAVKVV SSKKNETLDS PVSRPQAIPV
101: STLSGRVDSV KYGNIDAEIT VQSSPPISDQ FVRAGIAAVS FLSDVVNYKI PMLDGSEVLS SSNNCVVDRT KPVSNVRPSN IKTSRNDKLQ GKASTDTPVT
201: STLAHNSNYT KNKGDKCNSV RGRNPVSNNG VGEVETHGVI PDSCDRRRTM PPKPRTYPNR NMTNVRGSEG KLKHEIPEGF SRPQRATKLQ NAGVMVRQFS
301: NSSHVVGTVS RIIQQLNWSP ETENALRELN YLLDPYQANQ VLKQIHDHAV ALGFFYWLKQ QPGFKHDGHT YTTMVGILGR ARQFGAINKL LEQMVKDGCQ
401: PNVVTYNRLI HSYGRANYLR EALHVFSQMQ EARVEPDRVT YCTLIDIHAK AGYLDVAMDL YERMQDAGLS PDTFTYSVII NCLGKAGHLA AAHKLFCEMV
501: NQGCVPNLVT YNIMIALHAK ARNYSSALQL YRDMQNAGFE PDKVTYSIVM EVLGHCGYLE EAEAVFTEMK RKNWVPDEPV YGLLVDLWGK AGNVEKAWNW
601: YHAMINAGLC PNVPTCNSLL SAFLRVHRLP DAYNLLQSML ELGLNPSLQT YTLLLSCCTE AQTSFDMSFC CELMAITRHP AHTFLLTMPA AGPDGQNVRD
701: HVGTFLDLMH SEDRESKRGL VDSVVDFLHK SGLKEEAGSV WEVAADKNVY PDAVREKSSS YWLINLHVMS DGTAIIALSR TLAWFRRQML ISGIRPSRID
801: IVTGWGRRSR VTGSSMVRQA VQELLNMFGF PFLAQNGNSG CFVGCGEPLS RWLVQPYVER MHLL

Best Arabidopsis Sequence Match ( AT1G74750.2 )
(BLAST)

001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.