Factsheet for GSMUA_Achr8P15270_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G012890.2	Barley	cytosol	40.5	78.75
CDX85855	Canola	cytosol	42.76	73.17
CDX68166	Canola	cytosol	45.01	72.74
Bra003787.1-P	Field mustard	cytosol	42.28	72.36
CDX73110	Canola	cytosol	24.7	70.03
Zm00001d031217_P003	Maize	mitochondrion	58.67	57.91
TraesCS5D01G012800.1	Wheat	mitochondrion	58.43	57.81
TraesCSU01G073400.1	Wheat	mitochondrion	58.43	57.75
EES17501	Sorghum	mitochondrion	58.08	57.33
HORVU5Hr1G000760.8	Barley	mitochondrion	58.31	57.29
Os12t0638900-01	Rice	mitochondrion	58.43	57.28
TraesCS5A01G004000.1	Wheat	mitochondrion	57.72	57.24
CDY45392	Canola	mitochondrion	50.12	57.18
Bra015895.1-P	Field mustard	mitochondrion	50.12	57.18
Bra016533.1-P	Field mustard	plastid	49.52	54.09
CDX83800	Canola	plastid	49.05	53.71
PGSC0003DMT400034282	Potato	mitochondrion	55.11	53.7
KRH54492	Soybean	mitochondrion	54.51	52.04
CDY19261	Canola	plastid	51.43	51.79
CDX96689	Canola	plastid	48.93	51.76
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	54.99	51.56
Bra025697.1-P	Field mustard	plastid	51.19	51.55
AT1G74750.2	Thale cress	plastid	51.9	51.11
KRH63421	Soybean	plastid	54.04	50.67
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	55.34	50.49
CDY26713	Canola	plastid	50.59	49.59
KRH56975	Soybean	mitochondrion	51.54	49.54
AT1G18900.3	Thale cress	mitochondrion	51.66	49.1
CDX73109	Canola	plastid	21.73	43.88
GSMUA_Achr11P...	Banana	plastid	16.63	20.93
GSMUA_Achr11P...	Banana	mitochondrion	16.63	18.74
GSMUA_Achr7P26730_001	Banana	plastid	12.35	18.31

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr8G15270_001
EnsemblPlants:GSMUA_Achr8P15270_001	EnsemblPlants:GSMUA_Achr8T15270_001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TQN0
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002948A9D	SEG:seg	:	:

Description

Pentatricopeptide repeat-containing protein At1g18900 [Source:GMGC_GENE;Acc:GSMUA_Achr8G15270_001]

Coordinates

chr8:-:13003412..13006143

Molecular Weight (calculated)

92537.7 Da

IEP (calculated)

8.717

GRAVY (calculated)

-0.308

Length

842 amino acids

Sequence
(BLAST)

001: MLRAKQIGTL SHCARTFYIS GSRCGNAEGA SCTCSEDETC VPTRHPNSTL KANTANGAPT KAGSPCLQNA VGSIIHQKSR CTGPAQHVVS SSSSLRSDSS
101: PPNRNTDNMN AGVRASGTDM LNSSKLTAGR FVKAGMATVS MFSELVSHKT PGTEPGPQRC MADSTQPSFN TISSNDKSHN KPNYSKRQPS LNLVGVSDSS
201: STCPSSSVEK PSMRGNVKAK QNVTESSISN NGLPSGAKNQ RQSRKMTGST TETAGSTNRF HNPIKSARLH TGGPPSAGKL VKSGHAIEQY YHTLQRLKWG
301: PTTEEALDKL QYKLDPFQAN QVLKLLRDHS IALEFFRWLK SQPGFKHDEH TYTTMIGILG QARQFGAMRR LIEEMIKDGC QPTVVTYNRL IHAYGRANYL
401: DEAVKVFRDM QEVGRQPDHV TYCTLIDIHA KAGYLEVALD LYQRMQDVGL SPDTFTYSVM VNCLGKGGHL AAAYKLFCEM IEQGCVPNLV TYNIMIALQA
501: KARNYPCVVK LYRDMQVAGF CPDKITYSIV MEVLGHGGHL NEAEAVFMEM TRDWVPDEPV YGLLVDLWGK AGNVEKARAW YQAMLNAGLR PNVPTCNSLL
601: SAFLKVHRFA DAHGVLEHML GLGLVPSLQT YTLLLSCCTG SPSEMGLCCK LMALSGHPAH SFLLSLPDAE PNGGNVKAHA SSFFDLMHSE DRESKRGLVD
701: AVIDFLHKSG LKEEAGLVWE VAAERNVYPN SVREKRKCYW LINLHVMSEG TAVTALSRTL AWFHRQMLAS GTGPTRIDIV TGWGRRSRIT GSSLVRQAIQ
801: ELLHLFDFPF FTESGNSGCF VGHGEPLSRW LLNSYVERMH LL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.