Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0012g01090.t01 | Wine grape | plastid | 58.74 | 54.36 |
| PGSC0003DMT400085913 | Potato | plastid | 56.05 | 52.74 |
| PGSC0003DMT400045128 | Potato | plastid | 56.05 | 52.74 |
| CDX77673 | Canola | plastid | 55.01 | 51.76 |
| Bra025013.1-P | Field mustard | plastid | 54.86 | 51.62 |
| CDY33481 | Canola | plastid | 54.86 | 51.62 |
| Os03t0856100-01 | Rice | plastid | 49.33 | 51.56 |
| TraesCS4A01G319500.1 | Wheat | plastid | 54.41 | 51.41 |
| TraesCS5B01G559600.1 | Wheat | plastid | 54.56 | 51.26 |
| AT5G46580.1 | Thale cress | plastid | 54.11 | 50.91 |
| Zm00001d034892_P001 | Maize | plastid | 54.26 | 50.7 |
| KRH58221 | Soybean | cytosol | 53.51 | 50.28 |
| HORVU5Hr1G124070.6 | Barley | plastid | 53.96 | 49.79 |
| Solyc08g077140.1.1 | Tomato | nucleus | 20.03 | 49.63 |
| EER93066 | Sorghum | plastid | 53.06 | 49.17 |
| TraesCS5D01G565800.1 | Wheat | mitochondrion, plastid | 53.36 | 48.18 |
| KRH04318 | Soybean | cytosol | 46.34 | 47.33 |
| GSMUA_Achr7P26730_001 | Banana | plastid | 29.15 | 34.33 |
| GSMUA_Achr11P... | Banana | mitochondrion | 18.98 | 17.0 |
| GSMUA_Achr8P15270_001 | Banana | mitochondrion | 20.93 | 16.63 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | EnsemblPlantsGene:GSMUA_Achr11G00050_001 |
| EnsemblPlants:GSMUA_Achr11P00050_001 | EnsemblPlants:GSMUA_Achr11T00050_001 | InterPro:IPR002625 | InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M0RN36 |
| PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS50828 | PFscan:PS51375 | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF357 | InterPro:Pentatricopeptide_repeat | SMART:SM00463 | InterPro:Smr_dom | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI000295C983 | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr11G00050_001]
Coordinates
chr11:+:15650..17931
Molecular Weight (calculated)
74223.3 Da
IEP (calculated)
7.901
GRAVY (calculated)
-0.187
Length
669 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLLCASTSP TISIPHPLLS PLKPPATFLC HSSKTSAVTA SSPTADQTPS SSSLSDQLLP LSLTLLTSQP TSPSATVAPP PRLPAKPTWT NPSKPRPTVL
101: ALRRQPRPPF SHNPSLRPLT ALSRTLRLSP DLPSALSAAF PPGHSPSRDD ALLLLNSLRS WQKSLQFLDF LRSLPDFPLD TIFYNVVLKS LRAGHQWHHV
201: ERLAGEMIDA SVPLDNITYS TIITAAKRCR RFDGALRWFE RMYRTGLMPD EVTYSAVLDV YARLGHREEV VTLYERACAS GWRPDAVAFS VLGKMFGEAG
301: DYDGIRYVLK EMKDLGVKPN AVVYNTLIQA TGKAGKPGLA RSLFEEMVAA GLSPNEKTLT SLIKIYGKAR WSRDALELWE RMKSNRWPMD FILYNTLLSM
401: CADLGLEEEA EKLFEDMRRP DRCTCLIQCL GKARRIGDAV RVFETATERG IRPDDRLCGC LLSVAAVCEE GGETDMVLGC LKKANNRLVG LLKMLRDEQV
501: GFGEIKDEFR GIMNEAAVEV RRPFCNCLID ICRNQGHPSR RANELLHLGN LYGLYPGLHA RKSEEWSLDL RSLSVGAAKT AFEEWMKSLW DSVVEEEEEE
601: VLPFSFSVYT GSGTHKFSQG LASSFTSHLN EVAAPFRQVE DKCGSFVASK EDLVSWLRAT FSPAAVVNA
101: ALRRQPRPPF SHNPSLRPLT ALSRTLRLSP DLPSALSAAF PPGHSPSRDD ALLLLNSLRS WQKSLQFLDF LRSLPDFPLD TIFYNVVLKS LRAGHQWHHV
201: ERLAGEMIDA SVPLDNITYS TIITAAKRCR RFDGALRWFE RMYRTGLMPD EVTYSAVLDV YARLGHREEV VTLYERACAS GWRPDAVAFS VLGKMFGEAG
301: DYDGIRYVLK EMKDLGVKPN AVVYNTLIQA TGKAGKPGLA RSLFEEMVAA GLSPNEKTLT SLIKIYGKAR WSRDALELWE RMKSNRWPMD FILYNTLLSM
401: CADLGLEEEA EKLFEDMRRP DRCTCLIQCL GKARRIGDAV RVFETATERG IRPDDRLCGC LLSVAAVCEE GGETDMVLGC LKKANNRLVG LLKMLRDEQV
501: GFGEIKDEFR GIMNEAAVEV RRPFCNCLID ICRNQGHPSR RANELLHLGN LYGLYPGLHA RKSEEWSLDL RSLSVGAAKT AFEEWMKSLW DSVVEEEEEE
601: VLPFSFSVYT GSGTHKFSQG LASSFTSHLN EVAAPFRQVE DKCGSFVASK EDLVSWLRAT FSPAAVVNA
001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.