Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G319500.1 | Wheat | plastid | 84.75 | 88.7 |
| TraesCS5B01G559600.1 | Wheat | plastid | 84.35 | 87.78 |
| HORVU5Hr1G124070.6 | Barley | plastid | 84.21 | 86.07 |
| Os03t0856100-01 | Rice | plastid | 63.02 | 72.97 |
| Zm00001d034892_P001 | Maize | plastid | 69.77 | 72.21 |
| EER93066 | Sorghum | plastid | 69.77 | 71.61 |
| GSMUA_Achr11P... | Banana | plastid | 48.18 | 53.36 |
| PGSC0003DMT400045128 | Potato | plastid | 45.48 | 47.4 |
| PGSC0003DMT400085913 | Potato | plastid | 45.48 | 47.4 |
| VIT_02s0012g01090.t01 | Wine grape | plastid | 45.21 | 46.33 |
| Solyc08g077140.1.1 | Tomato | nucleus | 16.6 | 45.56 |
| AT5G46580.1 | Thale cress | plastid | 43.05 | 44.87 |
| CDX77673 | Canola | plastid | 42.91 | 44.73 |
| KRH58221 | Soybean | cytosol | 42.91 | 44.66 |
| CDY33481 | Canola | plastid | 42.65 | 44.44 |
| Bra025013.1-P | Field mustard | plastid | 42.65 | 44.44 |
| KRH04318 | Soybean | cytosol | 37.38 | 42.29 |
| TraesCS4D01G244400.1 | Wheat | plastid | 29.96 | 32.27 |
| TraesCS5D01G012800.1 | Wheat | mitochondrion | 18.35 | 15.98 |
| TraesCS2D01G422200.1 | Wheat | mitochondrion | 16.6 | 15.85 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:IPR002625 |
| InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF13812 | PFAM:PF17177 | InterPro:PPR_long | PFscan:PS50828 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF357 | InterPro:Pentatricopeptide_repeat | SMART:SM00463 | InterPro:Smr_dom |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS5D01G565800 | EnsemblPlants:TraesCS5D01G565800.1 | SEG:seg | : |
Description
No Description!
Coordinates
chr5D:-:563972520..563974745
Molecular Weight (calculated)
81881.6 Da
IEP (calculated)
8.070
GRAVY (calculated)
-0.163
Length
741 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGFSFLFL PRRTQSKLHS TLFPLSAMAP LPAPTAASAF LFHAPPRGHH HHHKPKPASS SRPTTTLCSA APSSTPSLAD QLEPLSRMLL TDKPTPAADR
101: AQRPTPEPTW VNPSRPRPTV LSLRRQRRRP AANHPSSAPL QPLLRDLRAL PEDADLAPTL HAFFPLPGSP PTSSDALLLL NYLHPSWRKT LSLLSYLRAL
201: PADAGFAVDT ILFNVALKSL RAARRWDEAE RLALDMLDSG VPLDNITYST LITAARRCRQ FAKAVEWFER MYSPASGVLP DEVTYSAVLD VYAQLRMKEE
301: VLALFDRARG SGWKPDHVAF AVLAKMFGEA GDYDGIQFVF KEMREVGIKP NIFVYNALLE ALGKTGKPGL ARNLFEEMAA EGVEPNARTL TAVAKIYGRA
401: RWGRDALQLW DQMRERKIPA DSILCNTLLS MCADVGLVAE AEQLFEEMKN PDLTDVPQPD KWSYTAMINI YGSIKDADRA LQLFVEMLQS GIEANIMSYT
501: IVIQCLGKAN RIRDAVEVLE AGLERGLKPD DRLCGCLLSV VALSTGEETE LVLGCLEKFN GNLVKLIRML GDNQVGTDEL KDQLKAVLNA AETEVRRPYC
601: NCLIDICQNH GLPARRPREL FRLAQGYGLY SKLHIRKDDE WLLDLRSLSV GAAKTAFDDW MAALSERVMQ GQPLPQSFNV FTGSSTHKFA QGLASAFAAH
701: LEEAAVPFRR SESQVGSFVS SRVELVPWLQ TSSSSSRVVA G
101: AQRPTPEPTW VNPSRPRPTV LSLRRQRRRP AANHPSSAPL QPLLRDLRAL PEDADLAPTL HAFFPLPGSP PTSSDALLLL NYLHPSWRKT LSLLSYLRAL
201: PADAGFAVDT ILFNVALKSL RAARRWDEAE RLALDMLDSG VPLDNITYST LITAARRCRQ FAKAVEWFER MYSPASGVLP DEVTYSAVLD VYAQLRMKEE
301: VLALFDRARG SGWKPDHVAF AVLAKMFGEA GDYDGIQFVF KEMREVGIKP NIFVYNALLE ALGKTGKPGL ARNLFEEMAA EGVEPNARTL TAVAKIYGRA
401: RWGRDALQLW DQMRERKIPA DSILCNTLLS MCADVGLVAE AEQLFEEMKN PDLTDVPQPD KWSYTAMINI YGSIKDADRA LQLFVEMLQS GIEANIMSYT
501: IVIQCLGKAN RIRDAVEVLE AGLERGLKPD DRLCGCLLSV VALSTGEETE LVLGCLEKFN GNLVKLIRML GDNQVGTDEL KDQLKAVLNA AETEVRRPYC
601: NCLIDICQNH GLPARRPREL FRLAQGYGLY SKLHIRKDDE WLLDLRSLSV GAAKTAFDDW MAALSERVMQ GQPLPQSFNV FTGSSTHKFA QGLASAFAAH
701: LEEAAVPFRR SESQVGSFVS SRVELVPWLQ TSSSSSRVVA G
001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.