Factsheet for Os03t0856100-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034892_P001	Maize	plastid	75.47	67.46
TraesCS5B01G559600.1	Wheat	plastid	74.69	67.13
TraesCS4A01G319500.1	Wheat	plastid	73.75	66.67
EER93066	Sorghum	plastid	74.53	66.07
HORVU5Hr1G124070.6	Barley	plastid	72.81	64.28
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	72.97	63.02
GSMUA_Achr11P...	Banana	plastid	51.56	49.33
Solyc08g077140.1.1	Tomato	nucleus	20.16	47.78
KRH58221	Soybean	cytosol	49.53	44.52
PGSC0003DMT400045128	Potato	plastid	48.91	44.02
PGSC0003DMT400085913	Potato	plastid	48.91	44.02
VIT_02s0012g01090.t01	Wine grape	plastid	49.69	43.98
CDX77673	Canola	plastid	47.66	42.9
Bra025013.1-P	Field mustard	plastid	47.5	42.76
CDY33481	Canola	plastid	47.5	42.76
AT5G46580.1	Thale cress	plastid	47.19	42.48
KRH04318	Soybean	cytosol	42.66	41.68
Os03t0215900-00	Rice	plastid	34.53	32.69
Os04t0612800-01	Rice	mitochondrion	20.31	16.6
Os12t0638900-01	Rice	mitochondrion	20.16	15.02

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	ProteinID:AAS01975.1	ProteinID:BAF13860.1	ProteinID:BAS87442.1	ProteinID:EEE60330.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlantsGene:Os03g0856100	EnsemblPlants:Os03t0856100-01	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF357	InterPro:Pentatricopeptide_repeat	UniProt:Q75IP7
SMART:SM00463	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000237EF9	SEG:seg

Description

Pentatricopeptide repeat domain containing protein. (Os03t0856100-01)

Coordinates

chr3:+:36107251..36109822

Molecular Weight (calculated)

70178.4 Da

IEP (calculated)

5.585

GRAVY (calculated)

-0.063

Length

640 amino acids

Sequence
(BLAST)

001: MAPLPAAAAA PAFLFLSPPG KLPGGKPRLK PSCAASTSSS SSSSPPLLRA IRALPDAADL APTLHDFFPP ASPPSTSDAL LLLNYLHPSW RKSLSLLCWL
101: RALPDGAFPL DTIVFNVALK SLRAARQWPQ AERLALDMLA SGVPLDNITY STLITAARRC RQFDKAVEWF ERMYASDGVL PDEVTYSAIL DVYAQLGMKE
201: EVLALFDRAR GSGWKPDHVA FAVLAKMFGE AGDYDGIQFV FKEMREVGIK PNIFVYNALL EALGKTGKPG LARNLFEEMT AEGVEPNART LTALAKIYGR
301: ARWGRDALQL WEQMREKKLP ADNILCNTLL SMCADVGLVG EAEQLFSEMK DPDLGDVPKP DKWSYTAMIN IYGSSGDADR ALQLFAEMVE SGIEPNIMSY
401: TIVIQCLGKA GRIQEAVDVL EAGMAKGLKP DDRLCGCLLS VVALSSGDET EVILACLEKV RSNLVKLIRM LGDARVGVED LRVELKGILN SAAPEVRRPY
501: CNCLIDICRN HGYPSERAVE LFRLARHYGL YSKIHTRKEE EWSLDLRSLS VGAAKTAFDD WMKTIREHEE EEALPQTFSV YTGSSTHKFA QGLATAVASH
601: LEQVGAPFRA SDSQLGSFIS SRDDLLSWLH TTMSSPDVAV

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.