Factsheet for Bra025013.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33481	Canola	plastid	99.72	99.72
CDX77673	Canola	plastid	98.17	98.17
AT5G46580.1	Thale cress	plastid	83.83	83.83
Solyc08g077140.1.1	Tomato	nucleus	25.18	66.3
VIT_02s0012g01090.t01	Wine grape	plastid	67.09	65.98
PGSC0003DMT400085913	Potato	plastid	65.26	65.26
PGSC0003DMT400045128	Potato	plastid	65.26	65.26
KRH58221	Soybean	cytosol	63.85	63.76
KRH04318	Soybean	cytosol	55.84	60.61
GSMUA_Achr11P...	Banana	plastid	51.62	54.86
Os03t0856100-01	Rice	plastid	42.76	47.5
EER93066	Sorghum	plastid	47.82	47.09
Zm00001d034892_P001	Maize	plastid	46.41	46.09
TraesCS5B01G559600.1	Wheat	plastid	45.57	45.51
TraesCS4A01G319500.1	Wheat	plastid	45.29	45.48
HORVU5Hr1G124070.6	Barley	plastid	45.43	44.55
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	44.44	42.65
Bra038453.1-P	Field mustard	plastid	33.61	34.29
Bra040576.1-P	Field mustard	plastid	32.63	33.57
Bra003787.1-P	Field mustard	cytosol	14.77	21.34
Bra015895.1-P	Field mustard	mitochondrion	18.42	17.75
Bra016533.1-P	Field mustard	plastid	18.28	16.86
Bra003609.1-P	Field mustard	mitochondrion, plastid	18.57	16.0
Bra025697.1-P	Field mustard	plastid	17.86	15.19

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra025013	EnsemblPlants:Bra025013.1	EnsemblPlants:Bra025013.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4E8A7
PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF357
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000253FB7C	SEG:seg	:	:	:	:

Description

AT5G46580 (E=0.0) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:+:24684039..24686174

Molecular Weight (calculated)

80266.0 Da

IEP (calculated)

7.865

GRAVY (calculated)

-0.266

Length

711 amino acids

Sequence
(BLAST)

001: MATVLSTSID VCFNPQYSDT KKHSLFSKPS SLRQSRTRKL NISCSSTKQP KTLEEEPITK TPSLSEQLKP LSATTLRQEQ QTHVLSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFAQKLN SSGFAEKSEF LALLDEIPHP PSRDNALLVL NSLREWQKTH IFFDWVKAKN LFPMETIFYN VTMKSLRFGR
201: QFQLIEAMAF EMVEDGVELD NITYSTIITC AKRCNLYDKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLESGLAPN EKTLTALVKI YGKARWAKDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFD DMKESGGCKP DSFSYTAMLN IYGSGGKAEK AMKLFEEMLE AGVQVNVMGC TCLVQCLGKA KRIDDLVSVF ETSVQRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMGCLRR ANEKLVAFVK LVIDEKTEFE TVKEEFKLVI NGTQVEARRP FCNCLIDICR GKKQQERAHE LLYLGTLFGL
601: YPGLHNKTVK EWSLDVRSLS VGAAETALEE WMRTLANIVR RREDLPEVFL AQTGTGTHRF SQGLANSFAS HLEQLAAPFK PSDRAGVFVA TKEDLVSWLE
701: SKFPPLVASQ A

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.