Factsheet for Bra003609.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67993	Canola	mitochondrion, plastid	90.79	91.34
AT1G79490.1	Thale cress	mitochondrion, plastid	85.58	84.45
KRH57615	Soybean	cytosol	69.33	78.57
VIT_12s0028g00090.t01	Wine grape	plastid	73.82	75.94
Solyc08g078150.1.1	Tomato	nucleus	72.61	75.44
PGSC0003DMT400067470	Potato	mitochondrion	72.61	75.44
KRG94011	Soybean	plastid	72.12	72.74
GSMUA_Achr11P...	Banana	mitochondrion	54.91	60.64
TraesCS2D01G422200.1	Wheat	mitochondrion	52.73	56.06
Os04t0612800-01	Rice	mitochondrion	52.97	55.81
KXG27099	Sorghum	mitochondrion	53.21	55.64
TraesCS2A01G424400.1	Wheat	mitochondrion	51.39	54.64
Zm00001d002345_P001	Maize	mitochondrion	51.88	54.38
TraesCS2B01G444000.1	Wheat	plastid	53.33	54.32
HORVU2Hr1G099330.11	Barley	mitochondrion	49.7	52.84
Bra003787.1-P	Field mustard	cytosol	14.42	24.19
Bra015895.1-P	Field mustard	mitochondrion	17.45	19.51
Bra016533.1-P	Field mustard	plastid	17.58	18.81
Bra025013.1-P	Field mustard	plastid	16.0	18.57
Bra025697.1-P	Field mustard	plastid	18.79	18.54
Bra040576.1-P	Field mustard	plastid	15.39	18.38
Bra038453.1-P	Field mustard	plastid	15.03	17.79

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra003609	EnsemblPlants:Bra003609.1	EnsemblPlants:Bra003609.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4CHC6	PFAM:PF01535
PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF326	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00025413DA	SEG:seg	:	:	:

Description

AT1G79490 (E=0.0) EMB2217 | EMB2217 (embryo defective 2217)

Coordinates

chrA07:-:14043227..14045704

Molecular Weight (calculated)

92769.5 Da

IEP (calculated)

9.395

GRAVY (calculated)

-0.038

Length

825 amino acids

Sequence
(BLAST)

001: MLRLRTAKSI PRNVISTLNR STTISAETPL LSPSPLNLSL AANLHSPSIR LLRSFTVCSV SRNTVANQSP SLYRSLCSSE SSSWTEEVEY LDESGSVIHS
101: GKGIRSVEPG VDDHVMVGGL KKPLMNASAV AKIVEVVQRW KWGPELETHL DKLQFLPSMV HVKQSLKIVE DVDAGLSLFR WVKKQPWYVP CDECYVVLFD
201: GLNKGKDFEG IQKLFEEMVQ DSGRRSDHHH SLGAYNQVIQ YLAKAEKLEV AFCCFKKAQD CGCKIDTQTY NNLMMLFLNK GLPYKAFEIY ESMEKTDSLL
301: DGSTYELIIP SLAKSGRLDA AFKLFQQMKE RKLRPSFSVF ASLVDSMGKA GRLDTSMKVY MEMQGFGHRP SATMFVSLID SYAKAGKLDT ALRLWDEMKS
401: SGFRPNFGLY TMIIESHAKS GKLEVAMSVF KDMEKAGFLP TPSTYSCLLE MHAGSGQVDS AMKIYNSMTN AGLRPGLSSY ISLLTLLANK RLVDVAGKIL
501: LEMKAMGYSV DVCASDVLMI YIKDASVDLA LKWLRFMGSS GIKTNNFIIR QLFESCMKNG LYDSARPLLE TLVHSSGKVD LVLYTSILAH LVRCQDEDKE
601: RQLMSILSTT KHKAHAFMCG LFTGPEQRKQ PVLTFVREFY QGIDYELEEG AARYFVNVLL NYLVLMGQIN RARCVWKVAY ENKLFPKAIV FDQHIAWSLD
701: VRNLSVGAAL IAVVHTLHRF RKRMLYYGVV PRRIKLVTGP TLKIVIAQML SSVESPFEVS KVVLRAPGDS VMEWFKKPIV QQFLLNEIPS RADILMHKLN
801: VMFPSSAPEL RSMFPPKPIM SSKSF

Best Arabidopsis Sequence Match ( AT1G79490.1 )
(BLAST)

001: MIRGRTAKVI PRNVIFTLSR SSISESPLIS PSRINPKLAG SFSFNIRLLS YFTVRNGFCP DCSVPRDPNF VGLTTQCRSI VRRFCSEKIG SSESSGWTEE
101: VEYLDESGSV LHSGKGIRSV EPGLDDHVMV GGLKKPYMNA SSVAKIVEVV QRWKWGPELE TQLDKLQFVP NMVHITQSLK IVKEVDAALS LFRWAKKQPW
201: YLPSDECYVV LFDGLNQGRD FVGIQSLFEE MVQDSSSHGD LSFNAYNQVI QYLAKAEKLE VAFCCFKKAQ ESGCKIDTQT YNNLMMLFLN KGLPYKAFEI
301: YESMEKTDSL LDGSTYELII PSLAKSGRLD AAFKLFQQMK ERKLRPSFSV FSSLVDSMGK AGRLDTSMKV YMEMQGFGHR PSATMFVSLI DSYAKAGKLD
401: TALRLWDEMK KSGFRPNFGL YTMIIESHAK SGKLEVAMTV FKDMEKAGFL PTPSTYSCLL EMHAGSGQVD SAMKIYNSMT NAGLRPGLSS YISLLTLLAN
501: KRLVDVAGKI LLEMKAMGYS VDVCASDVLM IYIKDASVDL ALKWLRFMGS SGIKTNNFII RQLFESCMKN GLYDSARPLL ETLVHSAGKV DLVLYTSILA
601: HLVRCQDEDK ERQLMSILSA TKHKAHAFMC GLFTGPEQRK QPVLTFVREF YQGIDYELEE GAARYFVNVL LNYLVLMGQI NRARCVWKVA YENKLFPKAI
701: VFDQHIAWSL DVRNLSVGAA LIAVVHTLHR FRKRMLYYGV VPRRIKLVTG PTLKIVIAQM LSSVESPFEV SKVVLRAPGE LVMEWFKKPI VQQFLLNEIP
801: SRSDILMHKM NVMFPSSAPE LRSMSPPKPL MSSKAF

Arabidopsis Description

EMB2217Pentatricopeptide repeat-containing protein At1g79490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9SAK0]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.