Factsheet for Bra003787.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85855	Canola	cytosol	99.19	99.19
CDX68166	Canola	cytosol	98.98	93.47
HORVU0Hr1G012890.2	Barley	cytosol	63.41	72.06
Bra015895.1-P	Field mustard	mitochondrion	90.24	60.16
AT1G74750.2	Thale cress	plastid	92.89	53.45
Bra016533.1-P	Field mustard	plastid	82.52	52.66
Bra025697.1-P	Field mustard	plastid	86.38	50.84
PGSC0003DMT400034282	Potato	mitochondrion	82.32	46.88
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	83.54	45.77
KRH54492	Soybean	mitochondrion	81.3	45.35
KRH63421	Soybean	plastid	81.3	44.54
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	82.32	43.88
KRH56975	Soybean	mitochondrion	78.05	43.84
EES17501	Sorghum	mitochondrion	73.37	42.32
GSMUA_Achr8P15270_001	Banana	mitochondrion	72.36	42.28
Zm00001d031217_P003	Maize	mitochondrion	72.56	41.85
TraesCS5D01G012800.1	Wheat	mitochondrion	71.54	41.36
TraesCS5A01G004000.1	Wheat	mitochondrion	71.34	41.34
TraesCSU01G073400.1	Wheat	mitochondrion	71.54	41.31
Os12t0638900-01	Rice	mitochondrion	71.75	41.09
HORVU5Hr1G000760.8	Barley	mitochondrion	71.34	40.96
Bra040576.1-P	Field mustard	plastid	21.95	15.63
Bra038453.1-P	Field mustard	plastid	21.95	15.49
Bra025013.1-P	Field mustard	plastid	21.34	14.77
Bra003609.1-P	Field mustard	mitochondrion, plastid	24.19	14.42

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlantsGene:Bra003787	EnsemblPlants:Bra003787.1	EnsemblPlants:Bra003787.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:M4CHV4
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000254164C	SEG:seg	:	:

Description

AT1G74750 (E=9e-265) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA07:-:15052610..15054088

Molecular Weight (calculated)

55385.1 Da

IEP (calculated)

7.645

GRAVY (calculated)

-0.128

Length

492 amino acids

Sequence
(BLAST)

001: MVGNLGRAKQ FGEINKLLNE MVRDGCQPNT VTYNRLIHSY GRANYLREAM NVFNQMQEAG CEPDRVTYCT LIDIHAKAGF LDIAMDMYQR MQAAGLSPDT
101: FTYSVIINCL GKAGHLPAAH RLFCEMVGQG CTPNLVTFNI MIALHAKARN YQSALKLYRD MKGAGFQPDK VTYSIVMEVL GHCGYLEEAE AVFTEMQRKN
201: WVPDEPVYGL LVDLWGKAGN VDKAWQWYQG MLHAGLRPNV TTCNSILRTF LRVHRLSEAY NLLQSMLALG LQSSLQTYTL LLSCCTDARS KFDLGFCGQL
301: MAVSGHPAHM FLLKMPPAGT DGQNVREHVS NFLDYMHSED RESKRGLMDA VVDFLHKSGL KEEAGSVWEV AAFKNVYPDA LREKSCSYWL INLHVMSEGT
401: AVTALSRTLA WFRKQMLVSG ECPSRIDIVT GWGRRSRVTG TSMVRQAVEE LLNMFNFPFF TENGNSGCFV GCGEPLKKWL LESSYVERMH LL

Best Arabidopsis Sequence Match ( AT1G74750.2 )
(BLAST)

001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.