CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63421	Soybean	plastid	95.01	93.32
CDX85855	Canola	cytosol	45.8	82.11
CDX68166	Canola	cytosol	48.19	81.57
Bra003787.1-P	Field mustard	cytosol	45.35	81.3
CDX73110	Canola	cytosol	26.3	78.11
HORVU0Hr1G012890.2	Barley	cytosol	36.17	73.67
KRH56975	Soybean	mitochondrion	71.54	72.03
Bra015895.1-P	Field mustard	mitochondrion	52.72	63.01
CDY45392	Canola	mitochondrion	52.72	63.01
PGSC0003DMT400034282	Potato	mitochondrion	60.43	61.69
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	62.13	61.02
CDX83800	Canola	plastid	52.49	60.21
Bra025697.1-P	Field mustard	plastid	57.03	60.17
CDY19261	Canola	plastid	56.8	59.93
Bra016533.1-P	Field mustard	plastid	52.15	59.66
AT1G74750.2	Thale cress	plastid	57.6	59.42
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	61.11	58.4
CDY26713	Canola	plastid	56.46	57.97
AT1G18900.3	Thale cress	mitochondrion	58.05	57.79
CDX96689	Canola	plastid	51.59	57.16
GSMUA_Achr8P15270_001	Banana	mitochondrion	52.04	54.51
TraesCS5A01G004000.1	Wheat	mitochondrion	52.04	54.06
EES17501	Sorghum	mitochondrion	52.04	53.81
Zm00001d031217_P003	Maize	mitochondrion	51.59	53.34
TraesCS5D01G012800.1	Wheat	mitochondrion	51.13	53.0
Os12t0638900-01	Rice	mitochondrion	51.36	52.74
TraesCSU01G073400.1	Wheat	mitochondrion	50.91	52.7
HORVU5Hr1G000760.8	Barley	mitochondrion	50.57	52.04
CDX73109	Canola	plastid	23.13	48.92
KRH58221	Soybean	cytosol	15.65	19.38
KRG94011	Soybean	plastid	17.69	19.07
KRH04318	Soybean	cytosol	14.06	18.93
KRH36593	Soybean	plastid	14.85	18.9
KRH57615	Soybean	cytosol	15.53	18.82
KRH51188	Soybean	nucleus	14.06	18.1
KRH36591	Soybean	plastid	13.95	17.77
KRH01964	Soybean	nucleus	14.29	17.7
KRH11577	Soybean	plastid	13.72	17.51
KRH36594	Soybean	plastid	13.38	16.74
KRH11578	Soybean	plastid	16.55	14.15
KRH11579	Soybean	plastid	15.99	13.88
KRH36592	Soybean	plastid	15.87	13.67

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100781029	MapMan:35.1	EMBL:ACUP02003532	EnsemblPlantsGene:GLYMA_06G189500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1KCN8	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH54492	ProteinID:KRH54492
ProteinID:KRH54492.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	SUPFAM:SSF81901
InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002339452	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:16581931..16585345

Molecular Weight (calculated)

97468.5 Da

IEP (calculated)

8.619

GRAVY (calculated)

-0.282

Length

882 amino acids

Sequence
(BLAST)

001: MQNMLRAKAI SSTLSSNARS ILLSGSRCNA ADGNSCNCPE DETCVSKRQQ RKNNEDLLAP KPPSLVSKAT SQVVGTLVSG NLANGPASHN VGSVGQSGCV
101: QKVRPTSYAP SKSESVTSAC VVDGVQEHVA HSSSLNADQF YRAGIAAVNF ISDVVNYKLP LSDGMGILNY SKNCMVDPAR ALPKIRSSNV QQIRTENFTS
201: VHPKPPVPAH PGPSKHTNNN HGAKGKANKS NLAKGFKYVA ASGTEKSGAA PNIPVNNHDR RALPQRTRTN SNHFVTNFGS NMQSSNPQMA RPFKESFNKH
301: TRDLNMPAGI APTRRHFTNS GHVVEGVKDI LKQLRWGPAT EKALYNLNFS IDAYQANQIL KQLQDHSVAL SFFYWLKRQP GFWHDGHTYT TMVGILGRAR
401: EFGAINKLLE QMVKDGCQPN VVTYNRLIHS YGRANYLGEA LNVFNQMQEM GCEPDRVTYC TLIDIHAKAG FLDVAMSMYE RMQEVGLSPD TFTYSVMINC
501: LGKSGNLSAA HRLFCEMVDQ GCVPNIVTYN ILIALQAKAR NYQTALKLYR DMQNAGFKPD KVTYSIVMEV LGYCGYLEEA EAVFFEMKQN NWVPDEPVYG
601: LLIDLWGKAG NVEKAWEWYH AMLRAGLLPN VPTCNSLLSA FLRVHRLPDA YNLLQNMVTL GLNPSLQTYT LLLSCCTEAQ SPYDMGFCCE LMAVSGHPAH
701: AFLQSMPAAG PDGQNVRDHV SKFLDLMHSE DREGKRGLVD AVVDFLHKSG LKEEAGSVWE VAAQKNVYPD AIREKSTCYW LINLHVMSDG TAVTALSRTL
801: AWFRRQMLAS GVGPNRIDII TGWGRRSRVT GSSLVRQAVQ ELLHVFSFPF FTENGNSGCF VGCGEPLSQW LVHSYVERMH LL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.