CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 5
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH04318	Soybean	cytosol	88.48	96.18
Solyc08g077140.1.1	Tomato	nucleus	25.98	68.52
VIT_02s0012g01090.t01	Wine grape	plastid	67.28	66.25
PGSC0003DMT400085913	Potato	plastid	64.75	64.84
PGSC0003DMT400045128	Potato	plastid	64.75	64.84
Bra025013.1-P	Field mustard	plastid	63.76	63.85
CDY33481	Canola	plastid	63.76	63.85
CDX77673	Canola	plastid	63.2	63.29
AT5G46580.1	Thale cress	plastid	61.66	61.74
GSMUA_Achr11P...	Banana	plastid	50.28	53.51
Os03t0856100-01	Rice	plastid	44.52	49.53
Zm00001d034892_P001	Maize	plastid	46.49	46.23
EER93066	Sorghum	plastid	46.35	45.71
TraesCS5B01G559600.1	Wheat	plastid	45.51	45.51
TraesCS4A01G319500.1	Wheat	plastid	44.94	45.2
HORVU5Hr1G124070.6	Barley	plastid	45.51	44.69
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	44.66	42.91
KRH51188	Soybean	nucleus	34.13	35.47
KRH01964	Soybean	nucleus	33.29	33.29
KRH11577	Soybean	plastid	31.88	32.85
KRH36591	Soybean	plastid	31.74	32.66
KRH36594	Soybean	plastid	31.88	32.2
KRH36593	Soybean	plastid	31.04	31.89
KRH11579	Soybean	plastid	29.63	20.77
KRH36592	Soybean	plastid	29.35	20.41
KRH11578	Soybean	plastid	29.21	20.16
KRH57615	Soybean	cytosol	16.15	15.8
KRG94011	Soybean	plastid	18.12	15.77
KRH54492	Soybean	mitochondrion	19.38	15.65
KRH63421	Soybean	plastid	19.38	15.37
KRH56975	Soybean	mitochondrion	18.4	14.95

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100780994	MapMan:35.1	EMBL:ACUP02003233	EnsemblPlantsGene:GLYMA_05G113300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KPM1
EnsemblPlants:KRH58221	ProteinID:KRH58221	ProteinID:KRH58221.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF357	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233969C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr5:+:30058084..30060578

Molecular Weight (calculated)

80499.9 Da

IEP (calculated)

7.125

GRAVY (calculated)

-0.257

Length

712 amino acids

Sequence
(BLAST)

001: MATPLPTVVD VYFTDTKRTR FSITTPCRQK TNRKFFIHCA TSNSTPEAPP TPTSDNNNNN KKNTSLSDQL APLANKTLSS ATRDQSYALS KPKSTWVNPT
101: KAKRSVLSSE RQKRATYSYS PQLRDLKRFA QKLNESGSSE DEFLACLEEI PRPISRENAL LILNTLKPWQ KTNLFLNWIR TQNLLPMETI FYNVTMKSLR
201: FGKQFGLIED LAHQMIDNGV PLDNITYSTI ISCAKKCNLY DKAVHWFERM YKTGLMPDEV TYSAILDVYA RLGKVEEVIS LYERGRATGW KPDPITFSVL
301: GKMFGEAGDY DGIRYVFQEM ESVGVQPNLV VYNTLLEAMG KAGKPGFARG LFEEMIESGI VPNEKTLTAV IKIYGKARWS RDALELWQRM KENGWPMDFI
401: LYNTLLNMCA DVGLVEEAET LFRDMKQSVH CKPDSWSYTA MLNIYGSQGD VDKAMKLFDE MCKLGVELNV MGFTCLIQCL GRAMEFDDLV RVFDISVERG
501: IKPDDRLCGC LLSVVSLSQG SNDEEKVLAC LQQANPKLVA FIHLIEDEKT SFETVKEEFK GIMSNAAVEV RRPFCNCLID ICRNKDLLER AHELLYLGTL
601: YGLYPGLHNK TVEEWCLDVR SLSVGAALTA LEEWMWTLTK IVKREETLPE LFLAQTGTGA HKFAQGLNIS FASHLRKLAA PFKQSEEKVG CFIASREDLV
701: SWVQSKSTAA AT

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.