Factsheet for Zm00001d034892_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93066	Sorghum	plastid	86.45	85.73
Os03t0856100-01	Rice	plastid	67.46	75.47
TraesCS4A01G319500.1	Wheat	plastid	73.6	74.44
TraesCS5B01G559600.1	Wheat	plastid	73.04	73.46
HORVU5Hr1G124070.6	Barley	plastid	72.21	71.31
TraesCS5D01G565800.1	Wheat	mitochondrion, plastid	72.21	69.77
GSMUA_Achr11P...	Banana	plastid	50.7	54.26
VIT_02s0012g01090.t01	Wine grape	plastid	47.91	47.44
PGSC0003DMT400045128	Potato	plastid	46.79	47.12
PGSC0003DMT400085913	Potato	plastid	46.79	47.12
CDX77673	Canola	plastid	46.51	46.84
Solyc08g077140.1.1	Tomato	nucleus	17.6	46.67
KRH58221	Soybean	cytosol	46.23	46.49
Bra025013.1-P	Field mustard	plastid	46.09	46.41
CDY33481	Canola	plastid	46.09	46.41
AT5G46580.1	Thale cress	plastid	45.67	45.99
KRH04318	Soybean	cytosol	40.22	43.97
Zm00001d028221_P001	Maize	plastid	31.28	32.42
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	14.8	28.96
Zm00001d002345_P001	Maize	mitochondrion	18.85	17.15
Zm00001d031217_P003	Maize	mitochondrion	19.27	16.18

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100191385	MapMan:35.1	UniProt:B4F8M2	EMBL:BT033460	EMBL:BT064002
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
ProteinID:ONM11687.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF357	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901	InterPro:Smr_dom
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B637B	EnsemblPlantsGene:Zm00001d034892	EnsemblPlants:Zm00001d034892_P001	EnsemblPlants:Zm00001d034892_T001
SEG:seg	:	:	:	:	:

Description

pentatricopeptide repeat53 pentatricopeptide repeat53

Coordinates

chr1:+:304951395..304953545

Molecular Weight (calculated)

78679.4 Da

IEP (calculated)

6.889

GRAVY (calculated)

-0.170

Length

716 amino acids

Sequence
(BLAST)

001: MAPLPAPPTA ASASAFLFSP PRSPSRYLHP KPKPTATILC SSTSAATAAG SASPSLSQQL EPLSRTLLHD KPTPIADRPT PEPTWVNPTK PKPSVLSLRR
101: HRRRSPPANT SSTPLQPLLR ALRALPEDAD LAGTLDAFFL QQQGQGAAPS PSDALLLLNY LHPSWRKSLS LLAWLRALPA GAFPLDTIFF NVALKSLRAA
201: RQWPHAERLA LDMLDAGVPL DNITYSTLIT AARRCRQFAK AVEWFERMYA ADGVLPDEVT YSAVLDVYAQ LGMKEEVLAL FDRARGSGWK PDHVAFAVLA
301: KMFGEAGDYD GIQFVFKEMR EVGIKPNIFV YNALLEALGK TGKPGLARNL FEEMIDQGVE PNARTLTALA KIYGRARWGR DALQLWDKMR ELKLPADSIL
401: CNTLLSMCAD VGLVAEAEQL FNEMKDPECR DVPKPDKWSY TAMINIYGSN GDTDSALQLF AEMLKGGIEP NIMSYTIVIQ CLGKARRIQQ AVEVLESGLE
501: KGLKPDDRLC GCLLSVIALS SGEEMEMVLS SLEKVNQNLV KLIRVLGDAQ VGGDDITEEL KSVLNSAAPE VRRPYCNCLI DVCRNHGFPP QRAREVFHLA
601: QTYGLYSKLQ SRKDEEWSLD LRSLSVGAAK TAFDDWMQTV SERWAQQKDL PESFSVYTGS STHKFAQGLA SAFAAHLDQM AVPFHASESQ AGSFISSRDD
701: LVSWLQMSRS SAVVAG

Best Arabidopsis Sequence Match ( AT5G46580.1 )
(BLAST)

001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.