Factsheet for Zm00001d028221_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92639	Sorghum	plastid	92.33	92.33
TraesCS4A01G079200.1	Wheat	plastid	74.24	74.56
Os03t0215900-00	Rice	plastid	71.78	73.37
TraesCS4D01G244400.1	Wheat	plastid	72.65	72.97
TraesCS4B01G245000.1	Wheat	plastid	72.36	72.57
HORVU2Hr1G122510.2	Barley	cytosol	37.77	68.5
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	35.46	66.94
HORVU4Hr1G067600.1	Barley	nucleus	67.0	66.24
Solyc09g042290.1.1	Tomato	cytosol	33.14	56.13
CDY42535	Canola	cytosol	44.14	55.35
CDY22765	Canola	cytosol	43.99	55.17
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	17.08	53.39
GSMUA_Achr7P26730_001	Banana	plastid	41.68	50.7
VIT_00s0194g00270.t01	Wine grape	plastid	51.09	50.36
Solyc11g012670.1.1	Tomato	nucleus	49.78	49.93
KRH51188	Soybean	nucleus	49.35	49.78
PGSC0003DMT400034773	Potato	plastid	49.2	49.35
KRH01964	Soybean	nucleus	50.22	48.74
CDY34461	Canola	plastid	49.35	48.71
Bra038453.1-P	Field mustard	plastid	48.77	48.35
CDY32239	Canola	plastid	48.91	48.29
Bra040576.1-P	Field mustard	plastid	48.05	48.05
KRH36593	Soybean	plastid	46.89	46.75
AT4G16390.1	Thale cress	plastid	47.03	46.3
KRH36594	Soybean	plastid	44.72	43.83
KRH36591	Soybean	plastid	43.56	43.5
KRH11577	Soybean	plastid	42.84	42.84
Zm00001d034892_P001	Maize	plastid	32.42	31.28
KRH11579	Soybean	plastid	44.86	30.51
KRH36592	Soybean	plastid	42.69	28.81
KRH11578	Soybean	plastid	42.55	28.49
Zm00001d002345_P001	Maize	mitochondrion	18.09	15.88
Zm00001d031217_P003	Maize	mitochondrion	18.67	15.12

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100191483	MapMan:35.1	UniProt:B4F8Z1	EMBL:BT033579	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0006397	GO:GO:0006412
GO:GO:0006417	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009987	GO:GO:0019538	GO:GO:0045727	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	ProteinID:ONL95104.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00017B6147	EnsemblPlantsGene:Zm00001d028221	EnsemblPlants:Zm00001d028221_P001
EnsemblPlants:Zm00001d028221_T001	SEG:seg	:	:	:	:

Description

ATP synthase4 ATP synthase4

Coordinates

chr1:-:27049419..27051494

Molecular Weight (calculated)

75584.6 Da

IEP (calculated)

7.094

GRAVY (calculated)

-0.104

Length

691 amino acids

Sequence
(BLAST)

001: MASLPLCRSP SSLLPSWPHR PISASFNPKN PSSPVAAHVS VQETPPQPQD PSPPSDSNPN GTRPSSSSNT RFLWVNPNSP RAADVARARA GSGRRARLAS
101: AAAALGACET TESAVEAALQ AAFPEPPSEQ DAVIVLNTAA ATRAETAVLA LRWFLGNAKV RKKVILYNVV LKLLRKKRLW SETEALWAEM LRDGVQPDNA
201: TFSTVISCAR ACGLHSKAVE WFDKMPEFGC SPDMLTYSAV IDAYGHAGNS EAALRLYDRA RAEKWQLDPV ICSTVIKVHS TSGNFDGALN VFEEMKAIGV
301: RPNLVVYNTM LDAMGRALRP WVVKTIHREM VDQQVQPSRA TYCCLLHAYT RARYGEDAMA VYRLMKDEAM GIDVMLYNML LSMCADIGYV DEAEEIFRDM
401: KASMGAHSKP DSWSYSSMVT LYSSTANVLS AEGILNEMVE AGFKPNIFVL TSLIRCYGKV GRTDDVVRSF GMLQDLGIIP DDRFCGCLLS VAANTPAEEL
501: GKVISCIERS NVQLGAVVKL LVDRSSSESF REAARELLRS SRGVVKMPYC NCLMDLCVNL NQMEKACALL DAAQQLGIYA NIQTRTQTQW SLHLRGLSVG
601: AALTTLHVWM NDLYTSLQTG NEGLPPLLGI HTGQGKNTYS DRGLAAMFEA HLKELDAPFH EAPDKAGWFL TTNVAAKQWL ESKAASELVT V

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.