Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
HORVU4Hr1G067600.1 | Barley | nucleus | 81.36 | 44.35 |
Zm00001d025264_P001 | Maize | mitochondrion, peroxisome | 42.52 | 44.26 |
TraesCS4D01G244400.1 | Wheat | plastid | 79.79 | 44.19 |
TraesCS4B01G245000.1 | Wheat | plastid | 78.74 | 43.54 |
TraesCS4A01G079200.1 | Wheat | plastid | 78.22 | 43.31 |
Os03t0215900-00 | Rice | plastid | 70.34 | 39.65 |
EER92639 | Sorghum | plastid | 68.77 | 37.92 |
Zm00001d028221_P001 | Maize | plastid | 68.5 | 37.77 |
CDY22765 | Canola | cytosol | 50.39 | 34.85 |
CDY42535 | Canola | cytosol | 50.39 | 34.85 |
VIT_00s0194g00310.t01 | Wine grape | cytosol, extracellular | 20.21 | 34.84 |
Solyc09g042290.1.1 | Tomato | cytosol | 33.07 | 30.88 |
VIT_00s0194g00270.t01 | Wine grape | plastid | 53.81 | 29.24 |
KRH51188 | Soybean | nucleus | 51.71 | 28.76 |
Bra038453.1-P | Field mustard | plastid | 52.23 | 28.55 |
CDY32239 | Canola | plastid | 52.23 | 28.43 |
CDY34461 | Canola | plastid | 51.97 | 28.29 |
Solyc11g012670.1.1 | Tomato | nucleus | 50.66 | 28.01 |
PGSC0003DMT400034773 | Potato | plastid | 50.66 | 28.01 |
Bra040576.1-P | Field mustard | plastid | 50.39 | 27.79 |
KRH01964 | Soybean | nucleus | 50.66 | 27.11 |
AT4G16390.1 | Thale cress | plastid | 49.08 | 26.64 |
GSMUA_Achr7P26730_001 | Banana | plastid | 38.85 | 26.06 |
KRH36591 | Soybean | plastid | 46.19 | 25.43 |
KRH11577 | Soybean | plastid | 45.41 | 25.04 |
KRH36594 | Soybean | plastid | 45.93 | 24.82 |
KRH36593 | Soybean | plastid | 44.62 | 24.53 |
HORVU5Hr1G124070.6 | Barley | plastid | 33.86 | 17.79 |
KRH11579 | Soybean | plastid | 45.67 | 17.13 |
KRH36592 | Soybean | plastid | 41.99 | 15.62 |
KRH11578 | Soybean | plastid | 41.73 | 15.41 |
HORVU0Hr1G012890.2 | Barley | cytosol | 16.27 | 14.32 |
HORVU2Hr1G099330.11 | Barley | mitochondrion | 21.52 | 10.57 |
HORVU5Hr1G000760.8 | Barley | mitochondrion | 23.1 | 10.27 |
Protein Annotations
EnsemblPlants:HORVU2Hr1G122510.2 | EnsemblPlantsGene:HORVU2Hr1G122510 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF437 |
PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | TIGRFAMs:TIGR00756 | UniParc:UPI000B46AF47 |
UniProt:A0A287JR62 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:-:753357017..753360345
Molecular Weight (calculated)
42706.0 Da
IEP (calculated)
6.635
GRAVY (calculated)
-0.018
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MLNMAAGNPA TTMLALRWFL ENAEVRSKVI LYNVVLKVFH YCLHSKTEAL WDAMLRDGVQ PDNTTFSTVI SCARACGPPG KAVEWFEKMP ETGCSPDILM
101: YSVLIDTYGR AGDAEMALRL YDHARSERCQ LDPVICATVI KVHSTNNNSD DALNVFEEMK VVGVKPTLVV YNTVLDAMGR AMRLWVVKTI HREMVSQKVQ
201: PNRATYCCLL QAYTRARYGE DAKIMYRKMK DEVMDIDVVL YNMLLSMCAD IGYVEEAEEI FTDMKSSVDT KCKPDSRTYS SMVTLYSCTG NVPGAEAILK
301: EMAQAGFKPN IFILTSLIRC YGKVGCTDDV VRLFGMLEDL KITPDDRFCG CLLTVAGIPQ WRNSARWLTA STGATPRLAP W
101: YSVLIDTYGR AGDAEMALRL YDHARSERCQ LDPVICATVI KVHSTNNNSD DALNVFEEMK VVGVKPTLVV YNTVLDAMGR AMRLWVVKTI HREMVSQKVQ
201: PNRATYCCLL QAYTRARYGE DAKIMYRKMK DEVMDIDVVL YNMLLSMCAD IGYVEEAEEI FTDMKSSVDT KCKPDSRTYS SMVTLYSCTG NVPGAEAILK
301: EMAQAGFKPN IFILTSLIRC YGKVGCTDDV VRLFGMLEDL KITPDDRFCG CLLTVAGIPQ WRNSARWLTA STGATPRLAP W
001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA
Arabidopsis Description
P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.