Factsheet for Solyc09g042290.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	36.27	66.97
Solyc11g012670.1.1	Tomato	nucleus	97.3	57.62
PGSC0003DMT400034773	Potato	plastid	95.34	56.46
CDY22765	Canola	cytosol	65.93	48.82
CDY42535	Canola	cytosol	65.44	48.46
VIT_00s0194g00270.t01	Wine grape	plastid	73.28	42.65
KRH51188	Soybean	nucleus	69.85	41.61
KRH01964	Soybean	nucleus	70.1	40.17
CDY34461	Canola	plastid	66.42	38.71
AT4G16390.1	Thale cress	plastid	66.42	38.6
Bra038453.1-P	Field mustard	plastid	65.69	38.45
Bra040576.1-P	Field mustard	plastid	64.95	38.35
CDY32239	Canola	plastid	65.44	38.14
Solyc08g077140.1.1	Tomato	nucleus	24.02	36.3
KRH36593	Soybean	plastid	60.29	35.5
KRH36594	Soybean	plastid	61.03	35.32
KRH11577	Soybean	plastid	58.33	34.44
Os03t0215900-00	Rice	plastid	56.86	34.32
KRH36591	Soybean	plastid	58.09	34.25
TraesCS4A01G079200.1	Wheat	plastid	57.11	33.87
TraesCS4B01G245000.1	Wheat	plastid	57.11	33.82
GSMUA_Achr7P26730_001	Banana	plastid	46.81	33.63
HORVU4Hr1G067600.1	Barley	nucleus	57.6	33.62
TraesCS4D01G244400.1	Wheat	plastid	56.62	33.58
EER92639	Sorghum	plastid	56.37	33.29
Zm00001d028221_P001	Maize	plastid	56.13	33.14
HORVU2Hr1G122510.2	Barley	cytosol	30.88	33.07
KRH11579	Soybean	plastid	62.01	24.9
KRH36592	Soybean	plastid	61.76	24.61
KRH11578	Soybean	plastid	59.8	23.64
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	17.16	19.13
Solyc08g078150.1.1	Tomato	nucleus	19.36	9.95
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	20.83	9.21

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0031425	GO:GO:0090305
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CST5	PFAM:PF13812	PFAM:PF17177
InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat
SMART:SM00463	InterPro:Smr_dom	EnsemblPlantsGene:Solyc09g042290.1	EnsemblPlants:Solyc09g042290.1.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000276CB03	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr9:-:22908128..22909354

Molecular Weight (calculated)

45248.2 Da

IEP (calculated)

4.862

GRAVY (calculated)

-0.098

Length

408 amino acids

Sequence
(BLAST)

001: MVIGNVYEEM KALGVKPNMT VYNSLLDAMG RARRPWQAKN IYGEMLSNGF QPSWGTYASL IRAYGRARYS EDALKIYKEM KEKGLELSVV LYNTLLAMCA
101: DVGLTDEAVN IFEEMKSSAS ETCQPDSWTY SSLITIFSCS GKVSEAEFTL NEMIEAGFEP NIFVLTSLVQ CYGKAGQTDD VVRTFDRLSD LGLSADERFT
201: GCLLNVLTQT AKEDLHKLTI CLERANPKLG YMVKLLVDDE VEEEEGAFKK HAAELLDCAT TDVRKAYCSC LIDICVNLNQ LERSCELLDV GLTLNIYTDI
301: MSRTATQWSL HLKSLSLGAA LTALHIWVND LNKALESGEK FPSLLGINTG HGKHKYSEKG LAGVFESHLK ELNAPFHEAP DKAGWFLTTK VAATSWLESR
401: CAQEVVAA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.