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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, peroxisome

Predictor Summary:
  • mitochondrion 4
  • peroxisome 2
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU2Hr1G122510.2 Barley cytosol 44.26 42.52
EER92639 Sorghum plastid 67.21 35.6
Zm00001d028221_P001 Maize plastid 66.94 35.46
Os03t0215900-00 Rice plastid 56.01 30.33
TraesCS4D01G244400.1 Wheat plastid 55.74 29.65
TraesCS4A01G079200.1 Wheat plastid 55.19 29.36
TraesCS4B01G245000.1 Wheat plastid 55.19 29.32
HORVU4Hr1G067600.1 Barley nucleus 54.64 28.61
CDY42535 Canola cytosol 36.34 24.14
CDY22765 Canola cytosol 35.79 23.77
GSMUA_Achr7P26730_001 Banana plastid 33.33 21.48
KRH51188 Soybean nucleus 40.16 21.46
VIT_00s0194g00270.t01 Wine grape plastid 40.16 20.97
Bra040576.1-P Field mustard plastid 39.07 20.69
Bra038453.1-P Field mustard plastid 38.52 20.23
PGSC0003DMT400034773 Potato plastid 37.98 20.17
Solyc11g012670.1.1 Tomato nucleus 37.98 20.17
CDY32239 Canola plastid 38.25 20.0
KRH01964 Soybean nucleus 38.8 19.94
CDY34461 Canola plastid 37.98 19.86
AT4G16390.1 Thale cress plastid 37.16 19.37
KRH36593 Soybean plastid 35.52 18.76
KRH11577 Soybean plastid 34.97 18.52
KRH36591 Soybean plastid 34.97 18.5
KRH36594 Soybean plastid 35.25 18.3
Solyc09g042290.1.1 Tomato cytosol 19.13 17.16
VIT_00s0194g00310.t01 Wine grape cytosol, extracellular 9.29 15.38
Zm00001d034892_P001 Maize plastid 28.96 14.8
KRH11579 Soybean plastid 34.7 12.5
KRH11578 Soybean plastid 34.15 12.11
KRH36592 Soybean plastid 32.51 11.62
Zm00001d031217_P003 Maize mitochondrion 18.31 7.85
Zm00001d002345_P001 Maize mitochondrion 15.03 6.99
Protein Annotations
Gene3D:1.25.40.10MapMan:35.1UniProt:A0A1D6J5Y8ProteinID:AQK43338.1GO:GO:0003674GO:GO:0003824
GO:GO:0004601GO:GO:0005488GO:GO:0005515GO:GO:0006950GO:GO:0006979GO:GO:0008150
GO:GO:0008152GO:GO:0009987GO:GO:0020037GO:GO:0055114GO:GO:0098869InterPro:IPR002885
InterPro:IPR011990PFAM:PF01535PFAM:PF13041PFAM:PF13812PFscan:PS51375PANTHER:PTHR24015
PANTHER:PTHR24015:SF437InterPro:Pentatricopeptide_repeatTIGRFAMs:TIGR00756InterPro:TPR-like_helical_dom_sfUniParc:UPI0008426540EnsemblPlantsGene:Zm00001d025264
EnsemblPlants:Zm00001d025264_P001EnsemblPlants:Zm00001d025264_T001SEG:seg:::
Description
Pentatricopeptide repeat-containing protein chloroplastic
Coordinates
chr10:+:111792673..111794363
Molecular Weight (calculated)
41563.3 Da
IEP (calculated)
7.698
GRAVY (calculated)
-0.214
Length
366 amino acids
Sequence
(BLAST)
001: MLRVRGMRVA DTRTRAGLGR RARLASAAAV LNACDPDEAA IEAGLQSALP EPPSEQDAVI VLNMAIATRP EIVVLARRWF LGNAEVQKKV ILYNVELKLL
101: RKKQHWCETE APWAKMLRHG MQPDNTIFST INSCACAYGL LSKVVKWFDK MSGFGCSPDW LTYSAVIDTY DHTGNFEAAL RRARAEKWQL DPVLCCTVNE
201: VHSTSGNFNR ALNLFKEMKA TGVNPNLVMC NTRLYVMGHA LQPWVVKSIH REMIDKQVQH NKVTYCCLLH AYTRAHYDED AMAVYRLMKD EAMDVMLYNM
301: LLSRYVDIGY VDEAEEIFRD MKASMDDRSK PDKWSYSSML RQYSSTANVL GVEGILNEMV EELGKL
Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)
001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA
Arabidopsis Description
P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.