CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36593	Soybean	plastid	66.95	68.11
KRH51188	Soybean	nucleus	61.56	63.36
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	19.43	61.99
Solyc09g042290.1.1	Tomato	cytosol	35.32	61.03
CDY22765	Canola	cytosol	46.95	60.07
CDY42535	Canola	cytosol	46.67	59.71
KRH01964	Soybean	nucleus	60.28	59.69
KRH11577	Soybean	plastid	57.16	58.32
KRH36591	Soybean	plastid	57.02	58.09
VIT_00s0194g00270.t01	Wine grape	plastid	56.88	57.2
CDY34461	Canola	plastid	55.74	56.14
Bra038453.1-P	Field mustard	plastid	54.33	54.95
Bra040576.1-P	Field mustard	plastid	53.76	54.85
CDY32239	Canola	plastid	54.33	54.71
Solyc11g012670.1.1	Tomato	nucleus	53.33	54.57
AT4G16390.1	Thale cress	plastid	53.62	53.85
PGSC0003DMT400034773	Potato	plastid	52.48	53.7
GSMUA_Achr7P26730_001	Banana	plastid	40.0	49.65
HORVU2Hr1G122510.2	Barley	cytosol	24.82	45.93
Os03t0215900-00	Rice	plastid	43.26	45.12
Zm00001d028221_P001	Maize	plastid	43.83	44.72
EER92639	Sorghum	plastid	43.83	44.72
KRH11579	Soybean	plastid	63.12	43.8
TraesCS4B01G245000.1	Wheat	plastid	42.7	43.69
TraesCS4A01G079200.1	Wheat	plastid	42.55	43.6
TraesCS4D01G244400.1	Wheat	plastid	41.84	42.88
HORVU4Hr1G067600.1	Barley	nucleus	41.28	41.63
KRH36592	Soybean	plastid	60.43	41.6
KRH11578	Soybean	plastid	60.43	41.28
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	18.3	35.25
KRH58221	Soybean	cytosol	32.2	31.88
KRH04318	Soybean	cytosol	29.08	31.3
KRH57615	Soybean	cytosol	15.32	14.84
KRG94011	Soybean	plastid	16.45	14.18
KRH54492	Soybean	mitochondrion	16.74	13.38
KRH56975	Soybean	mitochondrion	16.45	13.24
KRH63421	Soybean	plastid	16.6	13.03

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100819233	MapMan:35.1	EMBL:ACUP02005382	EnsemblPlantsGene:GLYMA_09G013600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	UniProt:I1L028	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:KRH36594	ProteinID:KRH36594	ProteinID:KRH36594.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0002337D2B	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1014738..1017182

Molecular Weight (calculated)

78361.8 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.212

Length

705 amino acids

Sequence
(BLAST)

001: MASCICASHS SLFHDRHYVS TSISSSFSLR NFKFPNAASS HKSLSLHSKA SQALHQDAAS HDPDANSLSL SKTRIWVNPN SPRAKHLQPK SPSARYSYLA
101: RLTESLNSCT PSAQHVSTIL KGLRDNVSER DAVFILDKMT NPETAPFVLG HFRDKIKPST DKEVILYNAT LKAFRKSRDF EGAEKLFDEM LQRGVKPDNI
201: TFSTLINSAR MCALPDKAVE WFKKMPSFGC EPDAMTCSAM VSAYAQTNNV DMALSLYGRA KAEKWSLDAS TFSTLIKMYG VLGNYVECLR IFGEMKVLGV
301: KPTVVTYNTL LGSLFRSKKS WQAKNVYKEM ISNGVSPDFI TYATLLRIYA GAQYREDALS VYKEMKGNGM DMTVDLYNRL LDMCADVGCI EEAVEIFEDM
401: KSSGTCQPDS LTFSSLITVY SCNGKVSEAE GMLNEMIQSG FQPTIYVLTS LVQCYGRAKQ TDDVVKIFKQ LLDLGIVPDV YFCCCLLNVM TQTPKEEFGK
501: LTDCIEKANT RLGSVVRYLV EGQEGDGDFR KEASELLNSI DFKVKKPLCN CLIDLCVSLN APNRARDVLD LGLMLEIYKN IQSRSETQWS LHLKKLSVGA
601: AITALHVWIN DLSKALESWE DLPPLLGVNT GQGKHKYSDK GLASVFESHL RELNAPFHQA PDKAGWFLVT KEAAKSWLES RGSAETIDDL NSQVSGASTV
701: ALQYQ

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.