CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36592	Soybean	plastid	86.24	86.91
KRH36593	Soybean	plastid	46.03	68.54
KRH11579	Soybean	plastid	66.96	68.01
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	13.08	61.09
KRH36594	Soybean	plastid	41.28	60.43
Solyc09g042290.1.1	Tomato	cytosol	23.64	59.8
CDY22765	Canola	cytosol	29.94	56.08
CDY42535	Canola	cytosol	29.84	55.9
KRH51188	Soybean	nucleus	36.05	54.31
KRH01964	Soybean	nucleus	36.24	52.53
KRH36591	Soybean	plastid	34.88	52.02
KRH11577	Soybean	plastid	34.69	51.81
VIT_00s0194g00270.t01	Wine grape	plastid	34.5	50.78
Solyc11g012670.1.1	Tomato	nucleus	32.75	49.06
PGSC0003DMT400034773	Potato	plastid	32.36	48.48
CDY34461	Canola	plastid	32.85	48.43
Bra038453.1-P	Field mustard	plastid	32.56	48.21
CDY32239	Canola	plastid	32.66	48.14
Bra040576.1-P	Field mustard	plastid	31.88	47.61
AT4G16390.1	Thale cress	plastid	32.36	47.58
GSMUA_Achr7P26730_001	Banana	plastid	24.22	44.01
EER92639	Sorghum	plastid	28.78	42.98
Zm00001d028221_P001	Maize	plastid	28.49	42.55
HORVU2Hr1G122510.2	Barley	cytosol	15.41	41.73
Os03t0215900-00	Rice	plastid	27.33	41.72
TraesCS4D01G244400.1	Wheat	plastid	27.62	41.42
TraesCS4A01G079200.1	Wheat	plastid	27.33	40.99
TraesCS4B01G245000.1	Wheat	plastid	27.13	40.64
HORVU4Hr1G067600.1	Barley	nucleus	26.74	39.48
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	12.11	34.15
KRH58221	Soybean	cytosol	20.16	29.21
KRH04318	Soybean	cytosol	18.02	28.4
KRH54492	Soybean	mitochondrion	14.15	16.55
KRH56975	Soybean	mitochondrion	13.86	16.32
KRH63421	Soybean	plastid	13.86	15.92
KRH57615	Soybean	cytosol	11.14	15.8
KRG94011	Soybean	plastid	12.11	15.28

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:106796311	MapMan:35.1	UniProt:A0A0R0FZH3	EMBL:ACUP02009215	EnsemblPlantsGene:GLYMA_15G118200
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:KRH11578	ProteinID:KRH11578	ProteinID:KRH11578.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006ED5FB3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:9269125..9272223

Molecular Weight (calculated)

116022.0 Da

IEP (calculated)

6.712

GRAVY (calculated)

-0.182

Length

1032 amino acids

Sequence
(BLAST)

0001: MAQSYLPCNT SSSSSSSSSS SISPIPCSSA FYCRKPITTY NSFSYFSRHF KLPTFPLSHN KPKTLLQVQA ANTPQDPDAK SSPLPQTSIW VNPKSPRAKH
0101: LWKNPYHARS SSLTKLAKSL DSCNPTQQHV SEILRVLGDN VFESDAVVIL NSMVNPYTAL LAVNYFNQKI KPSRHVVLYN VTLKLFRAVR DFEGEEKVFD
0201: EMLQRGVNPN LITFSTIISS ASMFSLPHKA IEFFEKMPSF GVQPDAGLTS FMIHAYACSW NADMALELYD RAKAERWRVD TAAFLALIKM FGKFDNFDGC
0301: LRVYNDMKVL GTKPIKETYD TLLYVMGRAK RAGDAKAIYE EMISNGFSPN WPTYAALLEA YCKARCHEDA LRVYKEMKKE KGMNVDVFLY NLLFDMCADV
0401: GCMDEAVEIF EDMKSSRTCQ PDNFTYSCLI NMYSSHLKQT ESLESSNPWE QQVSTILKGI GDMVSEGDVI FILNKMVNPN TASFVLRYFL SKINFTTDKE
0501: LILYNATLNL FRKSRDFEGA EKLFDEMLQR GVKPNNFTFS TMVNCANKPV ELFEKMSGFG YEPDGITCSA MVYAYALSNN VDKAVSLYDR AIAEKWCLDA
0601: AAFSALIKMY SMAGNYDRCL KIYQEMKVLG VKPNVVTYNT LLGAMLKAEK HRQAKAIYKE MRSNGVSPDF ITYACLLEVY TIAHYSEDAL GVYKEMKGNG
0701: MDMTADLYNK LLAMYADMGY IDRAVEIFYE MNSSGTCQPD SWTFASLIAI YSRSGKVSEA EGMLNEMIQS GFQPTIFVLT SLVHCYGKAK RTDDVVKVFK
0801: QLLELGIVPN DHFCCSLLNV LTQAPKEELG KLTDCIEKAN TKLGSVVKYL VEEEGDGDFR NEVSEFLNSI DAEVKMPLCN CLIDLCVKLN VPERACDLLD
0901: LGLMLEIYKN IQSKSQTQWS LHLKELSVGA AMTALHVWIN DLSKALESGE DLPPLLGINT GKGKHKYSEK GLAGIFESHL KELNAPFHEA KAGWFLATKA
1001: PAKSWLESRG SIADLNFELY GFGCSNNDPK YR

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.