Factsheet for Solyc11g012670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 9
peroxisome 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g042290.1.1	Tomato	cytosol	57.62	97.3
PGSC0003DMT400034773	Potato	plastid	97.1	97.1
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	22.35	69.68
CDY22765	Canola	cytosol	55.01	68.78
CDY42535	Canola	cytosol	54.57	68.24
VIT_00s0194g00270.t01	Wine grape	plastid	68.8	67.62
KRH51188	Soybean	nucleus	64.01	64.38
Bra038453.1-P	Field mustard	plastid	62.55	61.84
KRH01964	Soybean	nucleus	63.57	61.52
Bra040576.1-P	Field mustard	plastid	61.68	61.51
AT4G16390.1	Thale cress	plastid	62.55	61.4
CDY34461	Canola	plastid	62.26	61.29
CDY32239	Canola	plastid	61.97	61.0
GSMUA_Achr7P26730_001	Banana	plastid	44.85	54.4
KRH36591	Soybean	plastid	54.28	54.05
KRH11577	Soybean	plastid	53.99	53.84
KRH36593	Soybean	plastid	54.14	53.82
KRH36594	Soybean	plastid	54.57	53.33
HORVU2Hr1G122510.2	Barley	cytosol	28.01	50.66
Os03t0215900-00	Rice	plastid	48.91	49.85
Zm00001d028221_P001	Maize	plastid	49.93	49.78
TraesCS4B01G245000.1	Wheat	plastid	49.78	49.78
EER92639	Sorghum	plastid	49.78	49.64
TraesCS4A01G079200.1	Wheat	plastid	49.49	49.56
TraesCS4D01G244400.1	Wheat	plastid	49.2	49.27
HORVU4Hr1G067600.1	Barley	nucleus	47.46	46.78
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	20.17	37.98
Solyc08g077140.1.1	Tomato	nucleus	14.51	37.04
KRH11579	Soybean	plastid	51.96	35.24
KRH36592	Soybean	plastid	50.51	33.98
KRH11578	Soybean	plastid	49.06	32.75
Solyc08g078150.1.1	Tomato	nucleus	18.29	15.87
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	19.45	14.52

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0031425	GO:GO:0090305
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4D671	PFAM:PF12854	PFAM:PF13041
PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF81901	InterPro:Smr_dom	EnsemblPlantsGene:Solyc11g012670.1	EnsemblPlants:Solyc11g012670.1.1
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276A102	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:5440678..5442747

Molecular Weight (calculated)

76903.9 Da

IEP (calculated)

5.308

GRAVY (calculated)

-0.217

Length

689 amino acids

Sequence
(BLAST)

001: MASAPSSTLS PLYESNIFCN FNSPQKFTFP LKLHSKSCIR TTQVSLQEQS QVSNPNTSQY PDRKAVSSSK SKLWVNPKSP RASELKRKSY DFRYASLMKV
101: AESLDSCKPV EEDVSNVLAE LGDKIVEQDA VVTLNNMTNA ETALLAMKYF QQRLKLSKEV IVYNVTLKVL RKNKDLDRAE KVFDEMLERG VKPDNVTFST
201: IISCARQCNL PEKAIEWFEK LPSFGCEPDD VTYSVMIDAY GKAGNVDMAL SLYDRARTEK WRIDAVTFAT LIRIYGAAGN FDGCLNVYEE MKALGVKPNM
301: TVYNSLLDAM GRARRPWQAK NIYGEMLTNG FQPSWGTYAS LIRAYGRARY GEDALKIYKE MKEKGLELSV VLYNTLLAMC ADVGLTDEAV NIFEEMKSSA
401: SETCQPDSWT YSSLITIFSC SGKVSEAEFT LNEMIEAGFE PNIFVLTSLI QCYGKAGRTD DVVRTFDRLS DLGLSADERF TGCLLNVLTQ TAKEDLHKLT
501: ICLEKANPKL GYVVKLLVDD EVEEEEGAFK KHAAELLDCA TTDVRKAYCN CLIDICVNLN QLERACELLD VGLTLNIYTD IMSRTATQWS LHLKSLSLGA
601: ALTALHIWVN DLNKALESGE EFPSLLGINT GHGKHKYSEK GLAGVFESHL KELNAPFHEA PDKAGWFLTT KVAATSWLES RCAQEVVAA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.