CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11578	Soybean	plastid	86.91	86.24
KRH11579	Soybean	plastid	68.85	69.39
KRH36593	Soybean	plastid	46.39	68.54
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	13.57	62.9
Solyc09g042290.1.1	Tomato	cytosol	24.61	61.76
KRH36594	Soybean	plastid	41.6	60.43
KRH51188	Soybean	nucleus	37.11	55.47
CDY22765	Canola	cytosol	29.79	55.35
CDY42535	Canola	cytosol	29.69	55.17
KRH01964	Soybean	nucleus	37.21	53.51
KRH11577	Soybean	plastid	34.86	51.66
KRH36591	Soybean	plastid	34.47	51.01
Solyc11g012670.1.1	Tomato	nucleus	33.98	50.51
VIT_00s0194g00270.t01	Wine grape	plastid	34.57	50.5
PGSC0003DMT400034773	Potato	plastid	33.59	49.93
CDY34461	Canola	plastid	33.01	48.29
Bra038453.1-P	Field mustard	plastid	32.62	47.92
CDY32239	Canola	plastid	32.62	47.71
Bra040576.1-P	Field mustard	plastid	31.84	47.18
AT4G16390.1	Thale cress	plastid	32.23	47.01
GSMUA_Achr7P26730_001	Banana	plastid	23.93	43.13
EER92639	Sorghum	plastid	29.0	42.98
Zm00001d028221_P001	Maize	plastid	28.81	42.69
Os03t0215900-00	Rice	plastid	28.12	42.6
TraesCS4A01G079200.1	Wheat	plastid	28.42	42.3
HORVU2Hr1G122510.2	Barley	cytosol	15.62	41.99
TraesCS4B01G245000.1	Wheat	plastid	28.22	41.94
TraesCS4D01G244400.1	Wheat	plastid	27.83	41.42
HORVU4Hr1G067600.1	Barley	nucleus	28.03	41.06
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	11.62	32.51
KRH58221	Soybean	cytosol	20.41	29.35
KRH04318	Soybean	cytosol	18.07	28.24
KRH57615	Soybean	cytosol	11.62	16.35
KRH56975	Soybean	mitochondrion	13.67	15.98
KRH54492	Soybean	mitochondrion	13.67	15.87
KRG94011	Soybean	plastid	12.5	15.65
KRH63421	Soybean	plastid	13.38	15.26

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100818251	MapMan:35.1	UniProt:A0A0R0I209	EMBL:ACUP02005382	EnsemblPlantsGene:GLYMA_09G013400
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536
GO:GO:0009987	GO:GO:0016787	GO:GO:0031425	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EnsemblPlants:KRH36592	ProteinID:KRH36592	ProteinID:KRH36592.1	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023DCDAE	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:1006922..1010230

Molecular Weight (calculated)

115192.0 Da

IEP (calculated)

7.490

GRAVY (calculated)

-0.143

Length

1024 amino acids

Sequence
(BLAST)

0001: MAQSYLICSS SSSSSSSSSS PPCSSAFHYR KPITTSISFS CFSRHFKLPT FPLSHNPKTL LQVQATYTPQ DPDAKSSSLS KTSIWVNPKS PRVKHLWKNP
0101: YHARSSSLTK LAKSLDSCNP TQQRVSQILQ VLGDKVFESD AVVILNSMVN PYTALLAVNY YFTQKIKPSR HVVLYNVTLK LFRAVRDFEG EEKVFDEMLQ
0201: RGVNPNLITF STIISSASMF SLPYKAIEFF EKMPSFGVQP DAGVTSFMIH AYACSWNADM ALKLYDHAKT EKWRVDTAAF LALIKMFGKF DDFDGCLRVY
0301: NDMKVLGAKP IKETYDTLLN VMGRAKRAGD TKAIYEEMIS NGFSPNWPTY AALLEAYCKA RCHEDALRVY KEMKEKRINV DVFLYNLLFE MCADVGCMDE
0401: AVEIFKDMKS SWTCQPDNFT YSCLINMYSS HLKLTESLES SNPWEQQVST ILKGIGDMVS EGDVIFILNR MVNPNTASFV LKYFLNRINF TIDKELIFYN
0501: AVLNLFRKYR DFEGAKKLFD EMLQRGVKPN NFTFSTMVNC ANKPVELFEK MSGFGYEPDG ITCSAMVYAY ALSNNVDKAV SLYDRAIAEK WCLDAATFSA
0601: LIKMYSMAGN YDKCLKVYQE MKVLGAKPNV VTYNTLLGAM LKAQKHRQAK AIYKEMKSNG VSPDFITYAC LLEVYTIAHC SEEALGVYKE MKGNGMDMTA
0701: DLYNKLLAMC ADVGYTDRAA EIFYEMKSSG TCQPDSWTFS SMITMYSRSG KVSEAEGMLN EMIQSGFQPT IFVLTSLVHC YGKAKRTDDV VKVFKQLLDL
0801: GIVPNDHFCC SLLNVLTQTP KEEYGKLTDC IEKANTKLGS VVKYLVEEEG DGDFKKEASE FLNSIDAKVK MPLCNCLIDL CVKLNVPERA CDLLDLGLVL
0901: EIYPNIQSKS QTQWSLHLKE LSVGAAMTAL HVWINELSKA LESGEDLPPL LGINTGKGKL KYSEKGLAGV FESHLKELHA PFHEAKAGWF LVTKAAAKSW
1001: LESRGSIADL NFELYGFTCS NFQQ

Best Arabidopsis Sequence Match ( AT1G62910.1 )
(BLAST)

001: MQRSISLTAK RLFVHWNLQG IGNPPTVPSF FNLCGSGCWE RSFASASGDY REILRNRLSD IIKVDDAVDL FGDMVKSRPF PSIVEFNKLL SAVAKMNKFE
101: LVISLGEQMQ TLGISHDLYT YSIFINCFCR RSQLSLALAV LAKMMKLGYE PDIVTLSSLL NGYCHSKRIS DAVALVDQMV EMGYKPDTFT FTTLIHGLFL
201: HNKASEAVAL VDQMVQRGCQ PDLVTYGTVV NGLCKRGDID LALSLLKKME KGKIEADVVI YNTIIDGLCK YKHMDDALNL FTEMDNKGIR PDVFTYSSLI
301: SCLCNYGRWS DASRLLSDMI ERKINPNVVT FSALIDAFVK EGKLVEAEKL YDEMIKRSID PDIFTYSSLI NGFCMHDRLD EAKHMFELMI SKDCFPNVVT
401: YSTLIKGFCK AKRVEEGMEL FREMSQRGLV GNTVTYTTLI HGFFQARDCD NAQMVFKQMV SVGVHPNILT YNILLDGLCK NGKLAKAMVV FEYLQRSTME
501: PDIYTYNIMI EGMCKAGKVE DGWELFCNLS LKGVSPNVIA YNTMISGFCR KGSKEEADSL LKKMKEDGPL PNSGTYNTLI RARLRDGDRE ASAELIKEMR
601: SCGFAGDAST IGLVTNMLHD GRLDKSFLDM LS

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g62910 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ16]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.