Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||
|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G079200.1 | Wheat | plastid | 82.12 | 83.43 |
| TraesCS4D01G244400.1 | Wheat | plastid | 81.97 | 83.28 |
| TraesCS4B01G245000.1 | Wheat | plastid | 81.4 | 82.58 |
| HORVU2Hr1G122510.2 | Barley | cytosol | 44.35 | 81.36 |
| Os03t0215900-00 | Rice | plastid | 70.53 | 72.93 |
| EER92639 | Sorghum | plastid | 67.81 | 68.6 |
| Zm00001d028221_P001 | Maize | plastid | 66.24 | 67.0 |
| Solyc09g042290.1.1 | Tomato | cytosol | 33.62 | 57.6 |
| CDY22765 | Canola | cytosol | 43.92 | 55.72 |
| VIT_00s0194g00310.t01 | Wine grape | cytosol, extracellular | 17.6 | 55.66 |
| CDY42535 | Canola | cytosol | 43.78 | 55.54 |
| Zm00001d025264_P001 | Maize | mitochondrion, peroxisome | 28.61 | 54.64 |
| GSMUA_Achr7P26730_001 | Banana | plastid | 40.92 | 50.35 |
| VIT_00s0194g00270.t01 | Wine grape | plastid | 48.64 | 48.5 |
| KRH51188 | Soybean | nucleus | 47.35 | 48.32 |
| Solyc11g012670.1.1 | Tomato | nucleus | 46.78 | 47.46 |
| PGSC0003DMT400034773 | Potato | plastid | 46.49 | 47.17 |
| CDY34461 | Canola | plastid | 46.49 | 46.43 |
| KRH01964 | Soybean | nucleus | 47.07 | 46.21 |
| Bra040576.1-P | Field mustard | plastid | 45.35 | 45.88 |
| Bra038453.1-P | Field mustard | plastid | 45.49 | 45.62 |
| CDY32239 | Canola | plastid | 45.49 | 45.43 |
| AT4G16390.1 | Thale cress | plastid | 43.63 | 43.45 |
| KRH36593 | Soybean | plastid | 42.06 | 42.42 |
| KRH36594 | Soybean | plastid | 41.63 | 41.28 |
| KRH36591 | Soybean | plastid | 40.77 | 41.19 |
| KRH11577 | Soybean | plastid | 40.2 | 40.67 |
| KRH11579 | Soybean | plastid | 43.63 | 30.02 |
| HORVU5Hr1G124070.6 | Barley | plastid | 31.04 | 29.93 |
| KRH36592 | Soybean | plastid | 41.06 | 28.03 |
| KRH11578 | Soybean | plastid | 39.48 | 26.74 |
| HORVU0Hr1G012890.2 | Barley | cytosol | 12.88 | 20.79 |
| HORVU2Hr1G099330.11 | Barley | mitochondrion | 16.17 | 14.56 |
| HORVU5Hr1G000760.8 | Barley | mitochondrion | 17.17 | 14.0 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | UniProt:A0A287PGT0 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:HORVU4Hr1G067600 | EnsemblPlants:HORVU4Hr1G067600.1 | InterPro:IPR002625 | InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF01535 |
| PFAM:PF12854 | PFAM:PF13041 | PFAM:PF17177 | InterPro:PPR_long | PFscan:PS50828 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF437 | InterPro:Pentatricopeptide_repeat | SMART:SM00463 | InterPro:Smr_dom | TIGRFAMs:TIGR00756 |
| InterPro:TPR-like_helical_dom_sf | UniParc:UPI000B4776D9 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chrchr4H:+:560670623..560673067
Molecular Weight (calculated)
77023.1 Da
IEP (calculated)
6.709
GRAVY (calculated)
-0.155
Length
699 amino acids
Sequence
(BLAST)
(BLAST)
001: KRSSGQWAPP PHNPPTGEER SEESRAEQRD VFPTHLPLVP FLLPLMAAPP NLALLPAQEP LLLRLAGRRT CRRPGLAAPL RPGPEPQDFQ HCEVPLGEPK
101: QPARRGTRPR ARRXAACEPA DAPVAAALEA AFPEAPSEQD AAIVLNTAAG NPATAVLALR WFLENAEVRS KVILYNVVLK VLRKRRRWSE TEALWDAMLR
201: DGVQPDNTTF STVISCARAC GPPGKAVEWF EKMPETGCSP DMLTYSVMID AYGRAGDAEM ALRLYDRARS ERCQLDPVIC ATVIKVHSTN SNFDGALNVF
301: EEMKAVGVKP NLVVYNTVLD AMGRAMRPWV VKTIHREMVS QKVQPNRATY CCLLQAYTRA RYGEDAMIVY RKMKDEVMDI DVVLYNMLLS MCADIGYVEE
401: AEEIFRDMKS SMDTKCKPDS WTYSSMVTLY SCTGNVPGAE AILKEMAEAG FKPNIFILTS LIRCYGKAGC TDDVVRSFGM LEDLKITPDD RFCGCLLTVA
501: ADTPVEELGK VVECIDRSNA QLGTVVKLLV DRKASTESFK EAARGILSGV RGVVKMPYCN CLMDLCVNLG QMEKACALLD AALQLGIYSN VQTRTQTQWS
601: LHLRGLSVGA ALTTLHVWMN DLYTTLQSGE ELPPLLGIHT GEGRNMYSDK GLASVFESHL KELDAPFHSA PDKAGWFLTT SVAAKHWLEA KKSSELVAV
101: QPARRGTRPR ARRXAACEPA DAPVAAALEA AFPEAPSEQD AAIVLNTAAG NPATAVLALR WFLENAEVRS KVILYNVVLK VLRKRRRWSE TEALWDAMLR
201: DGVQPDNTTF STVISCARAC GPPGKAVEWF EKMPETGCSP DMLTYSVMID AYGRAGDAEM ALRLYDRARS ERCQLDPVIC ATVIKVHSTN SNFDGALNVF
301: EEMKAVGVKP NLVVYNTVLD AMGRAMRPWV VKTIHREMVS QKVQPNRATY CCLLQAYTRA RYGEDAMIVY RKMKDEVMDI DVVLYNMLLS MCADIGYVEE
401: AEEIFRDMKS SMDTKCKPDS WTYSSMVTLY SCTGNVPGAE AILKEMAEAG FKPNIFILTS LIRCYGKAGC TDDVVRSFGM LEDLKITPDD RFCGCLLTVA
501: ADTPVEELGK VVECIDRSNA QLGTVVKLLV DRKASTESFK EAARGILSGV RGVVKMPYCN CLMDLCVNLG QMEKACALLD AALQLGIYSN VQTRTQTQWS
601: LHLRGLSVGA ALTTLHVWMN DLYTTLQSGE ELPPLLGIHT GEGRNMYSDK GLASVFESHL KELDAPFHSA PDKAGWFLTT SVAAKHWLEA KKSSELVAV
001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA
Arabidopsis Description
P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.