CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36594	Soybean	plastid	68.11	66.95
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	20.06	62.9
Solyc09g042290.1.1	Tomato	cytosol	35.5	60.29
KRH51188	Soybean	nucleus	59.6	60.29
KRH36591	Soybean	plastid	59.31	59.39
KRH11577	Soybean	plastid	59.16	59.33
VIT_00s0194g00270.t01	Wine grape	plastid	59.31	58.63
KRH01964	Soybean	nucleus	59.6	58.01
CDY22765	Canola	cytosol	46.03	57.89
CDY42535	Canola	cytosol	45.6	57.35
Solyc11g012670.1.1	Tomato	nucleus	53.82	54.14
Bra040576.1-P	Field mustard	plastid	53.97	54.12
CDY34461	Canola	plastid	53.97	53.43
PGSC0003DMT400034773	Potato	plastid	53.1	53.41
Bra038453.1-P	Field mustard	plastid	53.68	53.37
CDY32239	Canola	plastid	53.82	53.29
AT4G16390.1	Thale cress	plastid	53.39	52.71
KRH11579	Soybean	plastid	76.05	51.87
GSMUA_Achr7P26730_001	Banana	plastid	38.82	47.36
EER92639	Sorghum	plastid	47.19	47.32
Zm00001d028221_P001	Maize	plastid	46.75	46.89
KRH36592	Soybean	plastid	68.54	46.39
KRH11578	Soybean	plastid	68.54	46.03
Os03t0215900-00	Rice	plastid	44.44	45.56
TraesCS4D01G244400.1	Wheat	plastid	45.02	45.35
TraesCS4A01G079200.1	Wheat	plastid	44.73	45.06
TraesCS4B01G245000.1	Wheat	plastid	44.73	44.99
HORVU2Hr1G122510.2	Barley	cytosol	24.53	44.62
HORVU4Hr1G067600.1	Barley	nucleus	42.42	42.06
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	18.76	35.52
KRH58221	Soybean	cytosol	31.89	31.04
KRH04318	Soybean	cytosol	28.43	30.08
KRH57615	Soybean	cytosol	16.88	16.07
KRG94011	Soybean	plastid	17.89	15.16
KRH54492	Soybean	mitochondrion	18.9	14.85
KRH63421	Soybean	plastid	18.47	14.25
KRH56975	Soybean	mitochondrion	17.89	14.16

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A0R0I206	EMBL:ACUP02005382	EnsemblPlantsGene:GLYMA_09G013500	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH36593
ProteinID:KRH36593	ProteinID:KRH36593.1	PFAM:PF13041	PFAM:PF13812	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF48452	InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0006EDDDCA	SEG:seg

Description

hypothetical protein

Coordinates

chr9:-:1011006..1014059

Molecular Weight (calculated)

77235.1 Da

IEP (calculated)

7.731

GRAVY (calculated)

-0.183

Length

693 amino acids

Sequence
(BLAST)

001: MAQPYPLCSS RSASSFSSHY RIPFFTIIPS HSKTLLHAPR FSFQPFNTLQ DAAKLDDPDA KSPSLSKKSF WVNPRSPRAK QLQQNSPHAR SSSLTKLAKS
101: LDSCNPTEEH VSEILNVLGN NVAERDAVFI LNTMANPNTA LLALKYFQQK ISPDKEVILY NVVMNLFRKS RDFQGAEKLF DEMLQRGVKP DNITFSTLVN
201: CASVSGLPNK AVVLFEKMSH FGCEPDGVTC SAMVYAYART NNVDKAVNLY DRAKAEKWSL DAVTFSTLIK MYSMAGKYDK CLEVYQEMKV VGVKPNVVTY
301: NTLLGALLRS KKHRQAKAIY KEMKSNGVSP DFITYASLLE VYTRAQCSEE ALGVYKEMKG NGMDITADLY NKLLAMCADV GYTDRASEIF YEMKSSGTCQ
401: PDSWTFSSMI TMYSRSGKVS EAEGMLNEMI QSGFQPTIFV MTSLICCYGK AKRTDDVVKI FKQLLDLGIV PNDHFCCSLL NVLTQTPKEE LGKLTDCIEK
501: ANTKLGTVVR YLMEELEGDE AFRKEALELL NSIDAEVKKP LCNCLIDLCV KLNVPERARD LLDLGLMLEI YTNIQFKSQT QWSLHLKELS VGAAMTALHV
601: WINDLSKALE SGEDLPPLLG INTGQGKHKY SDKGLASVFE SHLKELNAPF HESKAGWFLV TKAAAKSWLE SRDSTESIAG LNSLVLGVPT MVL

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.