Factsheet for GSMUA_Achr7P26730_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY42535	Canola	cytosol	50.18	51.72
CDY22765	Canola	cytosol	49.82	51.36
VIT_00s0194g00270.t01	Wine grape	plastid	59.86	48.5
Solyc09g042290.1.1	Tomato	cytosol	33.63	46.81
KRH51188	Soybean	nucleus	55.81	46.28
Solyc11g012670.1.1	Tomato	nucleus	54.4	44.85
PGSC0003DMT400034773	Potato	plastid	54.4	44.85
Bra038453.1-P	Field mustard	plastid	54.93	44.76
KRH01964	Soybean	nucleus	55.99	44.66
AT4G16390.1	Thale cress	plastid	54.93	44.44
CDY32239	Canola	plastid	54.75	44.43
Bra040576.1-P	Field mustard	plastid	54.05	44.43
CDY34461	Canola	plastid	54.58	44.29
Os03t0215900-00	Rice	plastid	52.11	43.79
TraesCS4A01G079200.1	Wheat	plastid	50.53	41.72
Zm00001d028221_P001	Maize	plastid	50.7	41.68
EER92639	Sorghum	plastid	50.7	41.68
TraesCS4B01G245000.1	Wheat	plastid	50.53	41.65
TraesCS4D01G244400.1	Wheat	plastid	50.0	41.28
HORVU4Hr1G067600.1	Barley	nucleus	50.35	40.92
KRH36594	Soybean	plastid	49.65	40.0
HORVU2Hr1G122510.2	Barley	cytosol	26.06	38.85
KRH36593	Soybean	plastid	47.36	38.82
KRH11577	Soybean	plastid	46.3	38.06
KRH36591	Soybean	plastid	45.42	37.28
Zm00001d025264_P001	Maize	mitochondrion, peroxisome	21.48	33.33
VIT_00s0194g00310.t01	Wine grape	cytosol, extracellular	12.5	32.13
GSMUA_Achr11P...	Banana	plastid	34.33	29.15
KRH11579	Soybean	plastid	45.6	25.49
KRH11578	Soybean	plastid	44.01	24.22
KRH36592	Soybean	plastid	43.13	23.93
GSMUA_Achr11P...	Banana	mitochondrion	17.43	13.25
GSMUA_Achr8P15270_001	Banana	mitochondrion	18.31	12.35

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507
GO:GO:0009536	GO:GO:0009570	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0031425	GO:GO:0045727	EnsemblPlantsGene:GSMUA_Achr7G26730_001	EnsemblPlants:GSMUA_Achr7P26730_001	EnsemblPlants:GSMUA_Achr7T26730_001	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TL09	PFAM:PF13041	PFAM:PF17177	InterPro:PPR_long
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF437	InterPro:Pentatricopeptide_repeat	SMART:SM00463
InterPro:Smr_dom	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00029537D0	SEG:seg	:

Description

Putative Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr7G26730_001]

Coordinates

chr7:-:27965263..27967758

Molecular Weight (calculated)

63077.4 Da

IEP (calculated)

7.969

GRAVY (calculated)

-0.308

Length

568 amino acids

Sequence
(BLAST)

001: MAFHISPAAP IPSHVHSSPS PPNFFQVSSP CSRRRSLFPC HPISLPFLSP PHPHVSPKAS VQAPTTPQTS PLPSPDSSSL DDGDARSRLP PPNPNPPFKN
101: SIWVNPNSPR ASRLRQRSSD SRYARLARLA ASLDSSDPTE PAVILYNVTL KVLRKCKDWN GLEALWEEMM EKGIKPDNVT FSTAISCARL CNLPAKAVEW
201: FEKMPEFGCH PDDITYSAMI DAYGRSGNVE MALGLYDRAR NEKWRLDPVT FATVIRVYSV SGNFDGALNV YEEMKALGVK PNVVIYNTLL DSMGRAGRPW
301: QVKTIYREMS SRGLVPTRAT YSALLRAYSK ARYAEDALGV YKQMNERGME LNLGIRPDDR FCGCLLNVAT QTPAEELGKI IGCIERANHQ LGSLVKMLVA
401: EGTDNETVRR EAEELFQYIS SEVKKAYCNC LIDLCVNHDQ LERACVLLDL AIRLEIYRDL QSRSPTQWSL HVRSLSLGAA LTALHVWMND LANCLQNGEE
501: LPPLLGIHTG HGKHKYSEKG LASVLESHLR EINAPFHEAP DKVGWFLTTK VAAQSWLASR SSSDVVAA

Best Arabidopsis Sequence Match ( AT4G16390.1 )
(BLAST)

001: MSFHHLCSSP SSLLHDPLPL CNLLSVYPKS TPRSFLSSYN PNSSHFHSRN LLQATHVSVQ EAIPQSEKSK LVDVDLPIPE PTASKSYVWV NPKSPRASQL
101: RRKSYDSRYS SLIKLAESLD ACKPNEADVC DVITGFGGKL FEQDAVVTLN NMTNPETAPL VLNNLLETMK PSREVILYNV TMKVFRKSKD LEKSEKLFDE
201: MLERGIKPDN ATFTTIISCA RQNGVPKRAV EWFEKMSSFG CEPDNVTMAA MIDAYGRAGN VDMALSLYDR ARTEKWRIDA VTFSTLIRIY GVSGNYDGCL
301: NIYEEMKALG VKPNLVIYNR LIDSMGRAKR PWQAKIIYKD LITNGFTPNW STYAALVRAY GRARYGDDAL AIYREMKEKG LSLTVILYNT LLSMCADNRY
401: VDEAFEIFQD MKNCETCDPD SWTFSSLITV YACSGRVSEA EAALLQMREA GFEPTLFVLT SVIQCYGKAK QVDDVVRTFD QVLELGITPD DRFCGCLLNV
501: MTQTPSEEIG KLIGCVEKAK PKLGQVVKML VEEQNCEEGV FKKEASELID SIGSDVKKAY LNCLIDLCVN LNKLERACEI LQLGLEYDIY TGLQSKSATQ
601: WSLHLKSLSL GAALTALHVW MNDLSEAALE SGEEFPPLLG INTGHGKHKY SDKGLAAVFE SHLKELNAPF HEAPDKVGWF LTTSVAAKAW LESRRSAGGV
701: SA

Arabidopsis Description

P67Pentatricopeptide repeat-containing protein At4g16390, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GWE0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.