CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85855	Canola	cytosol	44.29	78.86
CDX68166	Canola	cytosol	46.58	78.31
Bra003787.1-P	Field mustard	cytosol	43.84	78.05
CDX73110	Canola	cytosol	25.11	74.07
KRH54492	Soybean	mitochondrion	72.03	71.54
HORVU0Hr1G012890.2	Barley	cytosol	35.16	71.13
KRH63421	Soybean	plastid	72.26	70.49
PGSC0003DMT400034282	Potato	mitochondrion	59.47	60.3
Bra015895.1-P	Field mustard	mitochondrion	50.68	60.16
CDY45392	Canola	mitochondrion	50.68	60.16
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	59.25	57.8
AT1G74750.2	Thale cress	plastid	56.28	57.66
Bra016533.1-P	Field mustard	plastid	50.23	57.07
CDY19261	Canola	plastid	54.45	57.06
Bra025697.1-P	Field mustard	plastid	54.22	56.82
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	59.7	56.66
CDX83800	Canola	plastid	49.66	56.57
CDY26713	Canola	plastid	53.65	54.71
CDX96689	Canola	plastid	49.66	54.65
AT1G18900.3	Thale cress	mitochondrion	54.0	53.39
GSMUA_Achr8P15270_001	Banana	mitochondrion	49.54	51.54
EES17501	Sorghum	mitochondrion	49.89	51.23
Os12t0638900-01	Rice	mitochondrion	49.77	50.76
TraesCS5A01G004000.1	Wheat	mitochondrion	48.97	50.53
Zm00001d031217_P003	Maize	mitochondrion	49.09	50.41
TraesCS5D01G012800.1	Wheat	mitochondrion	48.4	49.82
TraesCSU01G073400.1	Wheat	mitochondrion	48.17	49.53
CDX73109	Canola	plastid	23.4	49.16
HORVU5Hr1G000760.8	Barley	mitochondrion	48.06	49.12
KRH57615	Soybean	cytosol	15.53	18.68
KRG94011	Soybean	plastid	17.35	18.58
KRH51188	Soybean	nucleus	14.5	18.54
KRH58221	Soybean	cytosol	14.95	18.4
KRH36593	Soybean	plastid	14.16	17.89
KRH04318	Soybean	cytosol	13.13	17.56
KRH01964	Soybean	nucleus	14.16	17.42
KRH36591	Soybean	plastid	13.58	17.2
KRH11577	Soybean	plastid	13.36	16.93
KRH36594	Soybean	plastid	13.24	16.45
KRH11578	Soybean	plastid	16.32	13.86
KRH36592	Soybean	plastid	15.98	13.67
KRH11579	Soybean	plastid	15.3	13.19

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100785113	MapMan:35.1	EMBL:ACUP02002805	EnsemblPlantsGene:GLYMA_05G030900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7KML7	EnsemblPlants:KRH56975	ProteinID:KRH56975
ProteinID:KRH56975.1	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom
InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000294FA3A	:	:

Description

hypothetical protein

Coordinates

chr5:+:2678918..2682880

Molecular Weight (calculated)

97415.8 Da

IEP (calculated)

8.473

GRAVY (calculated)

-0.272

Length

876 amino acids

Sequence
(BLAST)

001: MQTMLRAKQI TALSSSARTF LIGGSRCNAA DGSSCSCTED EICVSRRQHI KNHVLPAQKP SSLASKATSE VDETLVSENS VNGPACCKAK GVDQSSCIQQ
101: IRSASSPACK SDSVTYACDI DGVQEHVEHL SPLNSDQFYR ASIAAINFLS DLANYKFPLS NGKGILSYSK NCMVDTARTP PNIRSSNVKQ IKRENFTSVH
201: PRPSVSTNSR SKRAGHHHSG KCKGDKSNLG KGFKHIPSSG MEKSVVSPNI PLNNHEHRAF PQRTTTKSNH IVTNFGSYMR ASNTQMVEVV PTIKESFNKH
301: PRDLKMSART APMNRRIVEV VSDILRQLRW GPTAEKALYN LNFSMDAYQA NQILKQLQDP SVALGFFDWL RRQPGFRHDG HTYTTMVGIL GRARRFDSIS
401: KLLEQMVKDG CQPNVVTYNR LIHCYGCANY LKEALNVFNE MQEVGCEPDR VTYCTLIDIH AKAGFIDVAM SMYKRMQEAG LSPDTFTYSV IINCLGKAGN
501: LAAAHWLFCE MVEHGCVPNL VTYNIMIALQ AKARNYEMAL KLYHDMQNAG FQPDKVTYSI VMEALGHCGY LEEAESVFVE MQQKNWVPDE PVYGLLVDLW
601: GKAGNVEKAS EWYQAMLNAG LLPNVPTCNS LLSAFLRLHR LPDAYNLVQS MVALGLRPSL QTYTLLLSCC TEAQPAHDMG FFCELMAVTG HPAHAFLLSM
701: PAAGPDGQNV RDHVSKFLDM MHTEDREGKR GLVDSVVNFL NKSGLKEEAG SVWEAAAQRN VYPDAVKEKS SRYWLINLHV MSDGTAVTAL SRTLAWFRQR
801: MLVSGIRPSR VDIITGWGRR SKVTGSSLVR QAVQDLLHTF SFPFLAEKGN SGCFVGCGEP LCQWLNHSYV ERMHLL

Best Arabidopsis Sequence Match ( AT1G74750.2 )
(BLAST)

001: MIRAKHISNL SSSARSFFLS GSRPSAADGN SCTCAEDESG VSKRQQIRTE VVQTGKRASN LAAGLAGSIL PVEAGKPLVV PKTVEHFTRP SLLPQHVSSP
101: ALPGKADSVN HASAIIKEDV GVPIGDQIFK AGIGNVNLLS DIANYKIPLS DGTEVVGLPK SCMVDPTRPI SGVKSSNVKV IRREHLAKVY PRSADRVPIN
201: SSPGTKQASN DVAGKSFEAH DLLSNNVSGK RKIMPQRPYT DSTRYASGGC DYSVHSSDDR TIISSVEGFG KPSREMMKVT PRTAPTPRQH CNPGYVVENV
301: SSILRRFKWG HAAEEALHNF GFRMDAYQAN QVLKQMDNYA NALGFFYWLK RQPGFKHDGH TYTTMVGNLG RAKQFGEINK LLDEMVRDGC KPNTVTYNRL
401: IHSYGRANYL KEAMNVFNQM QEAGCEPDRV TYCTLIDIHA KAGFLDIAMD MYQRMQEAGL SPDTFTYSVI INCLGKAGHL PAAHRLFCEM VGQGCTPNLV
501: TFNIMIALHA KARNYETALK LYRDMQNAGF QPDKVTYSIV MEVLGHCGFL EEAEGVFAEM QRKNWVPDEP VYGLLVDLWG KAGNVDKAWQ WYQAMLQAGL
601: RPNVPTCNSL LSTFLRVHRM SEAYNLLQSM LALGLHPSLQ TYTLLLSCCT DARSNFDMGF CGQLMAVSGH PAHMFLLKMP PAGPDGQKVR DHVSNFLDFM
701: HSEDRESKRG LMDAVVDFLH KSGLKEEAGS VWEVAAGKNV YPDALREKSY SYWLINLHVM SEGTAVIALS RTLAWFRKQM LVSGDCPSRI DIVTGWGRRS
801: RVTGTSMVRQ AVEELLNIFN FPFFTENGNS GCFVGSGEPL KNWLLESYVE RMHLL

Arabidopsis Description

Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.