Factsheet for Os12t0638900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G012890.2	Barley	cytosol	45.29	89.84
EES17501	Sorghum	mitochondrion	81.37	81.95
Zm00001d031217_P003	Maize	mitochondrion	79.98	80.54
TraesCS5A01G004000.1	Wheat	mitochondrion	78.7	79.62
TraesCS5D01G012800.1	Wheat	mitochondrion	78.23	78.97
TraesCSU01G073400.1	Wheat	mitochondrion	77.18	77.82
HORVU5Hr1G000760.8	Barley	mitochondrion	73.57	73.75
CDX68166	Canola	cytosol	44.12	72.74
CDX85855	Canola	cytosol	41.56	72.56
Bra003787.1-P	Field mustard	cytosol	41.09	71.75
CDX73110	Canola	cytosol	23.98	69.36
GSMUA_Achr8P15270_001	Banana	mitochondrion	57.28	58.43
CDY45392	Canola	mitochondrion	48.31	56.23
Bra015895.1-P	Field mustard	mitochondrion	48.31	56.23
AT1G74750.2	Thale cress	plastid	52.62	52.87
PGSC0003DMT400034282	Potato	mitochondrion	52.97	52.66
Bra016533.1-P	Field mustard	plastid	47.26	52.66
CDX83800	Canola	plastid	47.03	52.54
KRH54492	Soybean	mitochondrion	52.74	51.36
Bra025697.1-P	Field mustard	plastid	49.48	50.84
KRH63421	Soybean	plastid	52.97	50.67
CDY19261	Canola	plastid	49.24	50.6
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	52.74	50.45
CDX96689	Canola	plastid	46.68	50.38
KRH56975	Soybean	mitochondrion	50.76	49.77
AT1G18900.3	Thale cress	mitochondrion	50.87	49.32
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	52.97	49.3
CDY26713	Canola	plastid	48.89	48.89
CDX73109	Canola	plastid	21.42	44.12
Os03t0856100-01	Rice	plastid	15.02	20.16
Os04t0612800-01	Rice	mitochondrion	16.53	18.14
Os03t0215900-00	Rice	plastid	13.74	17.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4352912	ProteinID:ABA99609.1	ProteinID:BAF30403.1	ProteinID:BAT18281.1
ProteinID:BAT18282.1	ProteinID:EAZ21359.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
EnsemblPlantsGene:Os12g0638900	EnsemblPlants:Os12t0638900-01	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	UniProt:Q2QLK4	SMART:SM00463
SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0000680B57
RefSeq:XP_015620082.1	:	:	:	:	:

Description

Pentatricopeptide repeat domain containing protein. (Os12t0638900-01);Similar to predicted protein. (Os12t0638900-02)

Coordinates

chr12:-:27398757..27403111

Molecular Weight (calculated)

95583.9 Da

IEP (calculated)

8.525

GRAVY (calculated)

-0.406

Length

859 amino acids

Sequence
(BLAST)

001: MLRAKQLGTL TQCARSFYVN GSRCGSTDGA SCTCPEDETS APKRQTANGI EQKFHSTRRP SVKAQTPSVQ HVVGSIGRAT GYPAPAVHIV PSNSSQETEP
101: ASGNTSNHPR TPQVLGNDYV QPSKQTARSI SHSAIAGAGV YTELVNLKST SNNGGTNQAS QMATSYSYQP LSDAQPSNIK SHNQHSLPEA KMPYNPSVQN
201: NLGKGVSRSG YAKSNQSFSG PPAMVANSPS QIKNQRHPGQ RHTNYHSNNF STDARWDEVQ TQNLSAPAMY TGSGHKSQAL AGTIKSHGGG PQSNLRSLKS
301: LRSVEQYYHT LQQMKWGPMT EHVLDNLHCK IDAFQANQVL KLLHDHTIAL GFFQWLKRQP GFKHDGHSYT TMIGILGQAR QFGTMRKLLD EMNSVHCKPT
401: VVTYNRIIHA YGRANYLREA VKVFEEMQKA GYEPDRVTYC TLIDIHAKGG YLEFAMDLYT RMQEVGLSPD TFTYSAMVNC LGKGGHLAAA YKLFCEMVEN
501: GCTPNLVTYN IMIALQAKAR NYENVVKLYK DMQVAGFRPD KITYSIVMEV LGHCGHLDEA EAVFIEMRHD WAPDEPVYGL LVDLWGKAGN VDKALGWYHA
601: MLQDGLQPNV PTCNSLLSAF LKINRFQDAY SVLQNMLAQG LVPSLQTYTL LLSCCTEAQA QMGLCCQLMA ITGHPAHMFL LYLPDAEPGG QNVRDHTRYF
701: LDMMHSEDRE SKRGLMDAVI DFLHKSGLKE EAGFIWEVAA QRNVYPDSVR EKDPSYWLIN LHLMSEGTAV TALSRTLAWF HRQILTMGKC PERIDIVTGW
801: GRRSRVTGSS LVRQSVQKLL HLFEFPFVTT RGNTGCFVGC GEPLNRWLHN PYVERMHLL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.