CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra003787.1-P	Field mustard	cytosol	99.19	99.19
CDX68166	Canola	cytosol	99.8	94.24
CDX73110	Canola	cytosol	53.46	88.55
HORVU0Hr1G012890.2	Barley	cytosol	64.23	72.98
CDY45392	Canola	mitochondrion	91.06	60.7
AT1G74750.2	Thale cress	plastid	93.7	53.92
CDX83800	Canola	plastid	83.74	53.58
CDY19261	Canola	plastid	88.21	51.91
CDX96689	Canola	plastid	82.11	50.75
CDY26713	Canola	plastid	86.18	49.36
PGSC0003DMT400034282	Potato	mitochondrion	83.13	47.34
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	84.35	46.21
KRH54492	Soybean	mitochondrion	82.11	45.8
KRH63421	Soybean	plastid	81.91	44.88
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	83.13	44.31
KRH56975	Soybean	mitochondrion	78.86	44.29
EES17501	Sorghum	mitochondrion	74.19	42.79
GSMUA_Achr8P15270_001	Banana	mitochondrion	73.17	42.76
Zm00001d031217_P003	Maize	mitochondrion	73.37	42.32
TraesCS5D01G012800.1	Wheat	mitochondrion	72.36	41.83
TraesCS5A01G004000.1	Wheat	mitochondrion	72.15	41.81
TraesCSU01G073400.1	Wheat	mitochondrion	72.36	41.78
Os12t0638900-01	Rice	mitochondrion	72.56	41.56
HORVU5Hr1G000760.8	Barley	mitochondrion	72.15	41.42
CDX73109	Canola	plastid	31.5	37.17
CDY42535	Canola	cytosol	21.34	19.06
CDY22765	Canola	cytosol	21.34	19.06
CDY32239	Canola	plastid	22.15	15.57
CDY34461	Canola	plastid	21.54	15.14
CDY33481	Canola	plastid	21.54	14.91
CDX77673	Canola	plastid	21.54	14.91
CDX79321	Canola	mitochondrion, plastid	24.39	14.55
CDX67993	Canola	mitochondrion, plastid	24.19	14.51

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX85855	ProteinID:CDX85855	ProteinID:CDX85855.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00143647001	InterPro:IPR002625	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF268	InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EE7F9E	SEG:seg	:	:

Description

BnaC06g22790D

Coordinates

chrLK031843:+:340711..342427

Molecular Weight (calculated)

55326.0 Da

IEP (calculated)

7.481

GRAVY (calculated)

-0.120

Length

492 amino acids

Sequence
(BLAST)

001: MVGNLGRAKQ FGEINKLLNE MVRDGCQPNT VTYNRLIHSY GRANYLREAM NVFNQMQEAG CEPDRVTYCT LIDIHAKAGF LDIAMDMYQR MQAAGLSPDT
101: FTYSVIINCL GKAGHLPAAH RLFCEMVGQG CTPNLVTFNI MIALHAKARN YQSALKLYRD MKGAGFQPDK VTYSIVMEVL GHCGYLEEAE AVFTEMQRKN
201: WVPDEPVYGL LVDLWGKAGN VDKAWQWYQA MLHAGLRPNV PTCNSLLSTF LRVHRLSEAY NLLQSMLALG LQSSLQTYTL LLSCCTDARS KFDLGFCGQL
301: MAVSGHPAHM FLLKMPPAGT DGQNVREHVS NFLDYMHSED RESKRGLMDA VVDFLHKSGL KEEAGSVWEV AAFKNVYPDA LREKSCSYWL INLHVMSEGT
401: AVTALSRTLA WFRKQMLVSG ECPSRIDIVT GWGRRSRVTG TSMVRQAVEE LLNMFNFPFF TENGNSGCFV GCGEPLKKWL LESSYVERMH LL

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.