CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45392	Canola	mitochondrion	68.35	38.62
CDX68166	Canola	cytosol	42.45	33.97
CDX85855	Canola	cytosol	37.17	31.5
AT1G74750.2	Thale cress	plastid	62.59	30.53
CDY19261	Canola	plastid	55.16	27.51
CDY26713	Canola	plastid	55.64	27.01
CDX96689	Canola	plastid	50.84	26.63
CDX83800	Canola	plastid	48.68	26.4
VIT_17s0000g05510.t01	Wine grape	endoplasmic reticulum	52.04	24.16
PGSC0003DMT400034282	Potato	mitochondrion	49.88	24.07
KRH56975	Soybean	mitochondrion	49.16	23.4
KRH54492	Soybean	mitochondrion	48.92	23.13
Solyc03g113380.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	50.12	22.64
KRH63421	Soybean	plastid	48.44	22.49
GSMUA_Achr8P15270_001	Banana	mitochondrion	43.88	21.73
EES17501	Sorghum	mitochondrion	44.12	21.57
Zm00001d031217_P003	Maize	mitochondrion	44.12	21.57
Os12t0638900-01	Rice	mitochondrion	44.12	21.42
TraesCSU01G073400.1	Wheat	mitochondrion	43.65	21.36
TraesCS5D01G012800.1	Wheat	mitochondrion	43.41	21.27
TraesCS5A01G004000.1	Wheat	mitochondrion	43.17	21.2
HORVU5Hr1G000760.8	Barley	mitochondrion	43.17	21.0
HORVU0Hr1G012890.2	Barley	cytosol	17.75	17.09
CDY42535	Canola	cytosol	13.43	10.16
CDY22765	Canola	cytosol	13.43	10.16
CDX67993	Canola	mitochondrion, plastid	18.23	9.27
CDY34461	Canola	plastid	15.35	9.14
CDY32239	Canola	plastid	15.35	9.14
CDX79321	Canola	mitochondrion, plastid	17.51	8.85
CDY33481	Canola	plastid	13.91	8.16
CDX77673	Canola	plastid	13.91	8.16
CDX73110	Canola	cytosol	0.72	1.01

Protein Annotations

EnsemblPlants:CDX73109	EnsemblPlantsGene:GSBRNA2T00103578001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF268
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX73109	ProteinID:CDX73109.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EEC54E	MapMan:35.1	:	:

Description

BnaC06g35570D

Coordinates

chrLK031797:+:2165716..2166969

Molecular Weight (calculated)

46169.2 Da

IEP (calculated)

9.466

GRAVY (calculated)

-0.402

Length

417 amino acids

Sequence
(BLAST)

001: MIRAKQISNL SSSARSFFLG GTRSSAADGN SCTSSAEDES SVLRRHQARP EAVHTGNRVF TRPSPLPLHV SPPVLPVKPD PANNHKIPLS DGTELSMVDP
101: TLPITSVKAI GREHLGKVYT TSASKDSSEE APRNASPGTK QASNDVSHDL TKTTVSGKRK CGYYPSGEMM RVTPAPRHVI EKVSSILRRF KWGPAAEEAL
201: HNSGFKMDAY QANQVLKQID NYANSLGFFY WLKTQPGFKH DEHTYTTMVG NLGRAKQFGE INNLLNEMVR DGCQPNTVTY NRLIHSYGRA NYLKEAMNVF
301: NQMQEAGCEP DRVTYCTLID IHAKAGFLDV AMDMYHRMQV AGLSPDTFTY SVIINCLGKA GHLVSAHRLF CEMVGQGCTP SLVTFNIMIA LHAKARNYRS
401: ALKLYREMKG FGFDLIK

Best Arabidopsis Sequence Match ( AT1G18900.1 )
(BLAST)

001: MIRAKHISNL SSTARSFFLN GSRTSVTDGN SCVYSDDENC VSKRQQLRKE AGQTEKRPSS ILPKPSVVGC ILPGEVTKPV VPKKVDDFGR PSLLPQHVSS
101: SPALPLKSHS VNYASTVVRE EVEGKASSEP IGDQIFKAGI VAVNFLSDLS NCKIPSYDGG SDAFGLPKSC MVDPTRPISS VKSSNVKAIR REHFAKIYPR
201: SAAKESSVGT TRNPSSNFRG AKEAERTGFV KGFRQVSNSV VGKSLPTTNN TYGKRTSVLQ RPHIDSNRFV PSGFSNSSVE MMKGPSGTAL TSRQYCNSGH
301: IVENVSSVLR RFRWGPAAEE ALQNLGLRID AYQANQVLKQ MNDYGNALGF FYWLKRQPGF KHDGHTYTTM VGNLGRAKQF GAINKLLDEM VRDGCQPNTV
401: TYNRLIHSYG RANYLNEAMN VFNQMQEAGC KPDRVTYCTL IDIHAKAGFL DIAMDMYQRM QAGGLSPDTF TYSVIINCLG KAGHLPAAHK LFCEMVDQGC
501: TPNLVTYNIM MDLHAKARNY QNALKLYRDM QNAGFEPDKV TYSIVMEVLG HCGYLEEAEA VFTEMQQKNW IPDEPVYGLL VDLWGKAGNV EKAWQWYQAM
601: LHAGLRPNVP TCNSLLSTFL RVNKIAEAYE LLQNMLALGL RPSLQTYTLL LSCCTDGRSK LDMGFCGQLM ASTGHPAHMF LLKMPAAGPD GENVRNHANN
701: FLDLMHSEDR ESKRGLVDAV VDFLHKSGQK EEAGSVWEVA AQKNVFPDAL REKSCSYWLI NLHVMSEGTA VTALSRTLAW FRKQMLASGT CPSRIDIVTG
801: WGRRSRVTGT SMVRQAVEEL LNIFGSPFFT ESGNSGCFVG SGEPLNRWLL QSHVERMHLL

Arabidopsis Description

Pentatricopeptide repeat (PPR) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4IDY2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.