Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G559600.1 | Wheat | plastid | 94.77 | 94.24 |
| HORVU5Hr1G124070.6 | Barley | plastid | 91.1 | 88.97 |
| TraesCS5D01G565800.1 | Wheat | mitochondrion, plastid | 88.7 | 84.75 |
| Os03t0856100-01 | Rice | plastid | 66.67 | 73.75 |
| Zm00001d034892_P001 | Maize | plastid | 74.44 | 73.6 |
| EER93066 | Sorghum | plastid | 73.87 | 72.44 |
| GSMUA_Achr11P... | Banana | plastid | 51.41 | 54.41 |
| VIT_02s0012g01090.t01 | Wine grape | plastid | 48.31 | 47.3 |
| PGSC0003DMT400045128 | Potato | plastid | 46.89 | 46.69 |
| PGSC0003DMT400085913 | Potato | plastid | 46.89 | 46.69 |
| Solyc08g077140.1.1 | Tomato | nucleus | 17.66 | 46.3 |
| CDX77673 | Canola | plastid | 45.76 | 45.57 |
| CDY33481 | Canola | plastid | 45.48 | 45.29 |
| Bra025013.1-P | Field mustard | plastid | 45.48 | 45.29 |
| AT5G46580.1 | Thale cress | plastid | 45.34 | 45.15 |
| KRH58221 | Soybean | cytosol | 45.2 | 44.94 |
| KRH04318 | Soybean | cytosol | 39.69 | 42.9 |
| TraesCS4A01G079200.1 | Wheat | plastid | 31.92 | 32.85 |
| TraesCS2A01G424400.1 | Wheat | mitochondrion | 17.8 | 16.24 |
| TraesCS5A01G004000.1 | Wheat | mitochondrion | 18.93 | 15.78 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0009507 | GO:GO:0009536 | InterPro:IPR002625 |
| InterPro:IPR002885 | InterPro:IPR011990 | PFAM:PF13041 | PFAM:PF13812 | PFAM:PF17177 | InterPro:PPR_long |
| PFscan:PS50828 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF357 | InterPro:Pentatricopeptide_repeat | SMART:SM00463 |
| InterPro:Smr_dom | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | EnsemblPlantsGene:TraesCS4A01G319500 | EnsemblPlants:TraesCS4A01G319500.1 | SEG:seg |
Description
No Description!
Coordinates
chr4A:+:608554446..608556572
Molecular Weight (calculated)
78125.6 Da
IEP (calculated)
6.700
GRAVY (calculated)
-0.185
Length
708 amino acids
Sequence
(BLAST)
(BLAST)
001: MATAASASAF LFHAPPRGHH HHHKPKPASR PTTTLCSAAP SSTPSLADQL EPLSRTLLTD KPTPAADRAQ RPTPEPTWVN PSRPRPTVLS LRRQRRRPAA
101: SHPSSAPLQP LLRDLRALPE DADLAPTLSA FFPLPGSPPT SSDALLLLNY LHPSWRKTLS LLAYLRALPA DAGFAVDTIL FNVALKSLRA ARRWDEAERL
201: ALDMLDSGVP LDNITYSTLI TAARRCRQFA KAVEWFERMY SPGSAVLPDE VTYSAVLDVY AQLRMKEEVL ALFDRARGSG WKPDHVAFAV LAKMFGEAGD
301: YDGIQFVFKE MREVGIKPNI FVYNALLEAL GKTGKPGLAR NLFEEMTAEG VEPNARTLTA VAKIYGRARW GRDALQLWDQ MRERKIPADS ILCNTLLSMC
401: ADVGLVAEAE QLFEEMKDPD LTDVPQPDKW SYTAMINIYG SIKDADRALQ LFVEMLQSGI EANIMSYTIV IQCLGKANRI RDAVEVLEAG LERGLKPDDR
501: LCGCLLSVVA LSSGEETELV LGCLEKFNGN LVKLIRMLGD DQVGTDELKE QLRAVLNAAE TEVRRPYCNC LIDICQNHGL PARRPRELFR LAQCYGLYSK
601: LHIRKDDEWL LDLRSLSVGA AKTAFDDWMA ALSERAAQGQ TLPQSFNVFT GSSTHKFAQG LASAFAAHLE EAAAPFRPSE SQVGSFVSSR DELVQWLQTS
701: SSSSPVVG
101: SHPSSAPLQP LLRDLRALPE DADLAPTLSA FFPLPGSPPT SSDALLLLNY LHPSWRKTLS LLAYLRALPA DAGFAVDTIL FNVALKSLRA ARRWDEAERL
201: ALDMLDSGVP LDNITYSTLI TAARRCRQFA KAVEWFERMY SPGSAVLPDE VTYSAVLDVY AQLRMKEEVL ALFDRARGSG WKPDHVAFAV LAKMFGEAGD
301: YDGIQFVFKE MREVGIKPNI FVYNALLEAL GKTGKPGLAR NLFEEMTAEG VEPNARTLTA VAKIYGRARW GRDALQLWDQ MRERKIPADS ILCNTLLSMC
401: ADVGLVAEAE QLFEEMKDPD LTDVPQPDKW SYTAMINIYG SIKDADRALQ LFVEMLQSGI EANIMSYTIV IQCLGKANRI RDAVEVLEAG LERGLKPDDR
501: LCGCLLSVVA LSSGEETELV LGCLEKFNGN LVKLIRMLGD DQVGTDELKE QLRAVLNAAE TEVRRPYCNC LIDICQNHGL PARRPRELFR LAQCYGLYSK
601: LHIRKDDEWL LDLRSLSVGA AKTAFDDWMA ALSERAAQGQ TLPQSFNVFT GSSTHKFAQG LASAFAAHLE EAAAPFRPSE SQVGSFVSSR DELVQWLQTS
701: SSSSPVVG
001: MATVLTTAID VCFNPQNSDT KKHSLFLKPS LFRQSRSRKL NISCSSLKQP KTLEEEPITT KTPSLSEQLK PLSATTLRQE QTQILSKPKS VWVNPTRPKR
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
101: SVLSLQRQKR SAYSYNPQIK DLRAFALKLN SSIFTEKSEF LSLLDEIPHP PNRDNALLVL NSLREWQKTH TFFNWVKSKS LFPMETIFYN VTMKSLRFGR
201: QFQLIEEMAL EMVKDGVELD NITYSTIITC AKRCNLYNKA IEWFERMYKT GLMPDEVTYS AILDVYSKSG KVEEVLSLYE RAVATGWKPD AIAFSVLGKM
301: FGEAGDYDGI RYVLQEMKSM DVKPNVVVYN TLLEAMGRAG KPGLARSLFN EMLEAGLTPN EKTLTALVKI YGKARWARDA LQLWEEMKAK KWPMDFILYN
401: TLLNMCADIG LEEEAERLFN DMKESVQCRP DNFSYTAMLN IYGSGGKAEK AMELFEEMLK AGVQVNVMGC TCLVQCLGKA KRIDDVVYVF DLSIKRGVKP
501: DDRLCGCLLS VMALCESSED AEKVMACLER ANKKLVTFVN LIVDEKTEYE TVKEEFKLVI NATQVEARRP FCNCLIDICR GNNRHERAHE LLYLGTLFGL
601: YPGLHNKTIK EWSLDVRSLS VGAAETALEE WMRTLANIIK RQEELPELFL AQTGTGTHRF SQGLANSFAL HLQQLSAPFR QSDRPGIFVA TKEDLVSWLE
701: SKFPPLVTSQ A
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g46580, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9LS25]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.