Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
plastid: 27992503 plasma membrane: 28056797 |
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
msms PMID:
28056797
doi
Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.
msms PMID:
27992503
doi
Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os09t0326800-01 | Rice | plasma membrane | 95.67 | 96.75 |
| Os02t0146700-02 | Rice | plasma membrane | 85.57 | 85.86 |
| GSMUA_Achr11P... | Banana | cytosol | 78.36 | 79.5 |
| Solyc07g053650.2.1 | Tomato | nucleus | 70.26 | 77.01 |
| VIT_12s0028g03130.t01 | Wine grape | cytosol | 75.47 | 76.4 |
| KRH55899 | Soybean | endoplasmic reticulum, nucleus | 74.36 | 75.71 |
| KRH25643 | Soybean | endoplasmic reticulum, nucleus | 74.14 | 75.48 |
| PGSC0003DMT400024306 | Potato | cytosol | 74.36 | 74.78 |
| AT2G20580.1 | Thale cress | cytosol | 71.25 | 72.05 |
| CDY05774 | Canola | cytosol | 71.14 | 71.54 |
| CDY35187 | Canola | cytosol, extracellular | 70.48 | 71.19 |
| CDY38389 | Canola | cytosol, extracellular | 70.48 | 71.19 |
| AT4G28470.1 | Thale cress | cytosol | 70.37 | 71.16 |
| Bra011030.1-P | Field mustard | cytosol | 70.37 | 71.16 |
| Bra024200.1-P | Field mustard | cytosol | 70.26 | 71.04 |
| CDY29907 | Canola | extracellular | 70.14 | 70.93 |
| CDX92875 | Canola | extracellular | 70.14 | 70.93 |
| CDY31952 | Canola | plasma membrane | 66.37 | 69.86 |
| TraesCS7D01G413900.1 | Wheat | mitochondrion | 63.82 | 69.19 |
| TraesCS7A01G421600.1 | Wheat | mitochondrion | 62.49 | 68.91 |
| Bra036488.1-P | Field mustard | cytosol, extracellular, plasma membrane | 63.71 | 68.91 |
| TraesCS7B01G322000.1 | Wheat | cytosol | 67.04 | 68.64 |
| TraesCS7A01G421700.1 | Wheat | cytosol | 67.04 | 68.64 |
| TraesCS7B01G321900.1 | Wheat | cytosol | 65.93 | 68.51 |
| Bra010366.1-P | Field mustard | cytosol | 66.59 | 67.72 |
| CDY14239 | Canola | cytosol, extracellular | 65.93 | 66.89 |
| CDX97442 | Canola | cytosol | 65.48 | 66.82 |
| AT4G08140.1 | Thale cress | cytosol | 6.22 | 66.67 |
| Solyc10g008180.1.1 | Tomato | plastid | 53.39 | 65.8 |
| TraesCS7D01G413800.1 | Wheat | cytosol | 44.73 | 65.0 |
| KRH57774 | Soybean | endoplasmic reticulum, plasma membrane | 20.87 | 64.38 |
| PGSC0003DMT400056260 | Potato | cytosol | 11.99 | 60.0 |
| Solyc10g008170.2.1 | Tomato | cytosol | 12.87 | 57.43 |
| KRH57675 | Soybean | cytosol | 18.98 | 56.44 |
| HORVU7Hr1G097500.16 | Barley | endoplasmic reticulum, golgi, plasma membrane | 35.63 | 54.78 |
| CDY72396 | Canola | cytosol | 8.55 | 53.47 |
| CDX99107 | Canola | cytosol | 11.32 | 39.38 |
| KRH30269 | Soybean | cytosol | 8.1 | 35.61 |
| CDY33144 | Canola | extracellular | 12.1 | 34.82 |
| CDY65736 | Canola | extracellular | 13.32 | 29.56 |
| GSMUA_Achr1P10580_001 | Banana | cytosol, nucleus, plasma membrane | 3.44 | 21.38 |
| Bra003811.1-P | Field mustard | endoplasmic reticulum | 4.55 | 16.67 |
| Os04t0608500-01 | Rice | plasma membrane | 5.44 | 15.91 |
| Os08t0224700-01 | Rice | plasma membrane | 15.65 | 14.29 |
Protein Annotations
| Gene3D:1.25.10.10 | MapMan:19.2.6.2.2.1 | InterPro:26S_Psome_Rpn1 | EntrezGene:4341960 | InterPro:ARM-like | InterPro:ARM-type_fold |
| UniProt:B9FQQ6 | ProteinID:BAS99332.1 | ProteinID:EEE66298.1 | GO:GO:0000502 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0004175 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008540 | GO:GO:0009056 |
| GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0030163 | GO:GO:0030234 | GO:GO:0034515 |
| GO:GO:0042176 | GO:GO:0043161 | GO:GO:0050790 | InterPro:IPR011989 | EnsemblPlantsGene:Os06g0699900 | EnsemblPlants:Os06t0699900-01 |
| PFAM:PF01851 | PIRSF:PIRSF015965 | PANTHER:PTHR10943 | PANTHER:PTHR10943:SF8 | InterPro:Proteasome/cyclosome_rpt | SUPFAM:SSF48371 |
| UniParc:UPI000193467A | RefSeq:XP_015643124.1 | SEG:seg | : | : | : |
Description
19S REGULATORY PARTICLE NON-ATPASE SUBUNIT 1BProteasome/cyclosome, regulatory subunit domain containing protein. (Os06t0699900-01)
Coordinates
chr6:-:29423376..29431536
Molecular Weight (calculated)
98696.0 Da
IEP (calculated)
4.891
GRAVY (calculated)
-0.082
Length
901 amino acids
Sequence
(BLAST)
(BLAST)
001: MPPREDPNGD ASSASPSDPV PPPPQQPQPQ PAKGKGKKKD EKKDDDLSEE DQALKEQLEL YVVRAQDTDP GVQKLALESM RQEIRSATSS MTSVPKPLKF
101: LRPHYGTLKA YFETMPESDL KKYMADILSV LALTMSAEGE RESLNYRMIG SEGDIGSWGH EYVRNLAGEI AQEFQKRQDD GMPTDSLKEL VEQIVSFHMK
201: HNAEPEAVDL LMEVEKLDLL VKHVDSTNYK RTCLYLTSSS KYLPAPDDMS ALKIAFEIYM KFGDFANALR IALLLYDKSL ELKPIFTATD DFQLKKQFAF
301: IIARHGLSIE IDDDIAADEN EKEALQDIIS NIKLSEGYLT LARDIEVMEP KSPEDIYKVH LIDGRGATSS SLDSARQNLA ATFVNAFVNA GFGQDKLMTT
401: PSDSSSSGSS GNWLFKNKEH GKASAAASLG MILLWDSDSG LAQLDKYLHS NDIHVVAGAL LGIGIVSCGV KSDCDPAFAL ISEYFSRDES IIRIGAILGL
501: GIAYAGSQKE EVRENLTAFL TDSQVPLEVL VFSAISLGLV FVGSCNEEVA QTIICVLMER SEPELAEPIM RLLPVALGLL YLGKQESVEA TAEVSKTFDE
601: KIRNYCDVTL MSLAYAGTGN VLKVQKLLGI CSEHLEKGET HQGPAVLGIS LIAMAEELGA EMAVRSLERL LQYGEQNIRR AVPLALGLLC ISNPKVNVMD
701: TMSRLSHDAD AEVSMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKEAGH LFCVRIAQGL VHLGKGLLTL SPYHSDRFLL SPIALAGLVT VLHACLDMKS
801: IILGKYHYML YILTLAMQPR MLLTVDEDLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYL PLTPVLEGFV ILRKNPEYHE
901: D
101: LRPHYGTLKA YFETMPESDL KKYMADILSV LALTMSAEGE RESLNYRMIG SEGDIGSWGH EYVRNLAGEI AQEFQKRQDD GMPTDSLKEL VEQIVSFHMK
201: HNAEPEAVDL LMEVEKLDLL VKHVDSTNYK RTCLYLTSSS KYLPAPDDMS ALKIAFEIYM KFGDFANALR IALLLYDKSL ELKPIFTATD DFQLKKQFAF
301: IIARHGLSIE IDDDIAADEN EKEALQDIIS NIKLSEGYLT LARDIEVMEP KSPEDIYKVH LIDGRGATSS SLDSARQNLA ATFVNAFVNA GFGQDKLMTT
401: PSDSSSSGSS GNWLFKNKEH GKASAAASLG MILLWDSDSG LAQLDKYLHS NDIHVVAGAL LGIGIVSCGV KSDCDPAFAL ISEYFSRDES IIRIGAILGL
501: GIAYAGSQKE EVRENLTAFL TDSQVPLEVL VFSAISLGLV FVGSCNEEVA QTIICVLMER SEPELAEPIM RLLPVALGLL YLGKQESVEA TAEVSKTFDE
601: KIRNYCDVTL MSLAYAGTGN VLKVQKLLGI CSEHLEKGET HQGPAVLGIS LIAMAEELGA EMAVRSLERL LQYGEQNIRR AVPLALGLLC ISNPKVNVMD
701: TMSRLSHDAD AEVSMAAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKEAGH LFCVRIAQGL VHLGKGLLTL SPYHSDRFLL SPIALAGLVT VLHACLDMKS
801: IILGKYHYML YILTLAMQPR MLLTVDEDLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATEKYL PLTPVLEGFV ILRKNPEYHE
901: D
001: MAPTQDPNSV GGGAKKDEAT LKVPSKDPKK KDEKKDEDLS EEDLELKQNL ELYVERVQDP NPELQKAALE SMRQEIRAST SSMTSVPKPL KFLRPHYGTL
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
101: KAFHETMADS DLKKYLSDIL SVLALTMSAD GERESLRFRL IGTEGDIGSW GHEYVRNLAG EIAQEYTKRQ SEEASIDDLM ELVQQIVAFH MKHNAETEAV
201: DLLMDVEDLD LLLEHVDKTN FKRTCNYLTS AARYLPGPDD MLVLDISYMI YMKFEEYPNA LQIALFLDNT QYVKQVFTSC TDLLKKKQFC YMIARHGITF
301: ELDDEMVADD DDREALQDIV NNTKLSEGYL TLARDIEVME AKTPEDIYKA HLLDGRASSG ASVDSARQNL AATFVNAFVN AGFGQDKLMT VPSDSTTGSS
401: GNWLFKNKEH GKTSAAASLG MIQLWDVDSG LSQLDKYFHS NDNPIIAGAL LGVGIVNCGI KNDCDPALAL LGDYIDKEDS SVRIGAIMGL GISYAGSQND
501: QIRNKLSPIL NDAKAPLDVI AFASLSLGMI YVGSCNEEVA QSIIFALMDR SEAELGDALT RFLPLGLGLL YLGKQESVEA TAEVSKTFNE KIRKYCDMTL
601: LSCAYAGTGN VLKVQDLLAQ CGEHLEKGDI HQGPAVLGLA MVAMSEELGV DMEIRSLERM LQYGEQNIRR AVPLALGLLC ISNPKVTVMD TLSRLSHDTD
701: SEVAMSAIIS LGLIGAGTNN ARIAGMLRNL SSYYYKDMSL LFCVRIAQGL VHMGKGLLTL SPFHSERFLL SPTALAGIVT LLHACLDMKP IILGKYHYVL
801: YFLVLAMQPR MMLTVDENLK PLSVPVRVGQ AVDVVGQAGR PKTITGFQTH STPVLLAAGE RAELATDKYI PLSPILEGFI ILKENPDYRE E
Arabidopsis Description
RPN1ARPN1A [Source:UniProtKB/TrEMBL;Acc:A0A178VZC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.