Factsheet for Os06t0264300-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0146700-02
Os03t0243300-01
Os06t0699900-01
Os09t0326800-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G02540.1	Os02t0146700-02	AT2G20580.1	21798944
AT3G02540.1	Os06t0699900-01	AT2G20580.1	21798944
AT3G02540.1	Os09t0326800-01	AT2G20580.1	21798944
AT3G02540.1	Os03t0243300-01	AT4G38630.1	20059542
AT5G38470.1	Os03t0243300-01	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G206300.1	Wheat	cytosol	78.21	79.17
TraesCS7B01G113500.1	Wheat	cytosol	75.54	76.66
TraesCS7D01G209100.1	Wheat	cytosol	75.06	76.17
KXG19738	Sorghum	cytosol	73.85	74.75
Zm00001d037326_P001	Maize	cytosol	71.91	73.88
Zm00001d045665_P003	Maize	cytosol	70.46	70.98
GSMUA_Achr9P15580_001	Banana	cytosol	37.53	70.14
HORVU7Hr1G042100.8	Barley	cytosol	67.8	66.67
Solyc02g063130.2.1	Tomato	cytosol, extracellular	61.26	66.06
PGSC0003DMT400062159	Potato	cytosol	61.02	65.28
GSMUA_Achr5P05860_001	Banana	cytosol	61.74	65.05
PGSC0003DMT400032941	Potato	cytosol	61.26	64.87
CDY01661	Canola	cytosol	58.84	64.29
CDX74522	Canola	cytosol	58.84	63.95
Solyc02g085840.2.1	Tomato	cytosol	60.05	63.75
Bra028184.1-P	Field mustard	cytosol	58.11	63.49
VIT_01s0011g03410.t01	Wine grape	cytosol	61.02	63.48
CDY58121	Canola	cytosol	58.35	62.76
KRH75377	Soybean	cytosol, nucleus	59.08	62.24
VIT_14s0006g03040.t01	Wine grape	cytosol	57.38	62.2
KRH45279	Soybean	cytosol	60.29	62.09
Bra028408.1-P	Field mustard	cytosol	57.38	62.04
CDX67404	Canola	cytosol	57.38	62.04
AT5G38470.1	Thale cress	cytosol	56.66	61.9
GSMUA_Achr3P07380_001	Banana	cytosol	60.53	61.12
KRG90804	Soybean	cytosol	58.6	60.2
KRH35965	Soybean	cytosol	58.84	59.56
Os09t0407200-01	Rice	cytosol	56.42	59.44
Bra001050.1-P	Field mustard	cytosol	57.63	59.35
Solyc04g007120.2.1	Tomato	cytosol, plastid	58.6	59.17
CDX74251	Canola	cytosol	57.38	59.1
Os02t0465000-00	Rice	cytosol	12.83	57.61
Os08t0430200-01	Rice	cytosol	56.42	57.39
CDX91998	Canola	cytosol	55.45	56.82
AT3G02540.1	Thale cress	cytosol	57.38	56.56
KRH01763	Soybean	cytosol	47.22	52.0
AT5G16090.1	Thale cress	cytosol	21.07	50.88
Os02t0179300-01	Rice	plasma membrane	43.34	48.51
CDY26493	Canola	cytosol	31.96	37.18
CDX69474	Canola	cytosol	32.69	36.99
Bra008649.1-P	Field mustard	cytosol	30.51	36.63
CDY26494	Canola	nucleus	23.0	35.32
CDY26496	Canola	cytosol	29.3	33.7
Bra008647.1-P	Field mustard	cytosol	26.88	31.27
CDX69472	Canola	cytosol	26.88	31.27
CDY26495	Canola	cytosol	12.35	26.84
Bra008648.1-P	Field mustard	cytosol	29.3	19.3
CDX69473	Canola	cytosol	28.81	18.06

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EntrezGene:4340699	EMBL:AK061556
ProteinID:BAD54365.1	ProteinID:BAD54370.1	ProteinID:BAF19248.1	ProteinID:BAS97135.1	ProteinID:EAZ36555.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	EnsemblPlantsGene:Os06g0264300	EnsemblPlants:Os06t0264300-01
PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053
PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	UniProt:Q5Z6P9	InterPro:Rad23	SMART:SM00165	SMART:SM00213
SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601
InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0000447002	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd
InterPro:XPC-bd_sf	RefSeq:XP_015643927.1	SEG:seg	:	:	:

Description

Rad23Similar to RAD23, isoform I. (Os06t0264300-01);Similar to RAD23, isoform I. (Os06t0264300-02);Similar to DNA repair protein RAD23. (Os06t0264300-03)

Coordinates

chr6:+:8720602..8726645

Molecular Weight (calculated)

43078.8 Da

IEP (calculated)

4.413

GRAVY (calculated)

-0.227

Length

413 amino acids

Sequence
(BLAST)

001: MKLFVKTLKG TNFEIEASPE ASVAEVKRII ESTQGQNVYP ADQQMLIHQG KILKDDTTLE GNKVAENSFL VIMLSKAKAS SSGASTASKA PVSQSQPATP
101: VASVARTPPP QAPVVTPEPA PPSAQPPVAS ATPAAAATPA AAVTASSDAD VYSQAASNLV SGSNLEQTIQ QILDMGGGTW ERDMVVRALR AAYNNPERAI
201: DYLYSGIPEN VEPPQPVARA PAAVQQGNPQ VPSQAQAAPP PPVQPAGGAS GPNANPLNLF PQGIPSAGSN PGAAAGAGAG AGALDALRQL PQFQALLALV
301: QANPQILQPM LQELGKQNPQ ILRLIQENQA EFLRLVNESP DSGAAGGNIL GQLAAAMPQA LTVTPEEREA IQRLEAMGFN RELVLEVFFA CNKDEELAAN
401: YLLDHGHEFE DQQ

Best Arabidopsis Sequence Match ( AT3G02540.1 )
(BLAST)

001: MKIFVKTLKG THFEIEVKPE DSVVDVKKNI ESVQGADVYP AAKQMLIHQG KVLKDETTIE ENKVAENSFI VIMMNKSKPA SAAASSASAG TSQAKSIPPS
101: TSQPSISPQT PASVSAPVAP APTRPPPPAP TPTPAPVAAT ETVTTPIPEP VPATISSSTP APDSAPVGSQ GDVYGQAASN LAAGSNLEST IQQILDMGGG
201: TWDRETVVLA LRAAFNNPER AVEYLYTGIP EQAEVPPVAR PPASAGQPAN PPAQTQQPAA APASGPNANP LDLFPQGLPN VGGNPGAGTL DFLRNSQQFQ
301: ALRAMVQANP QVLQPMLQEL GKQNPNLMRL IQDHQADFLR LINEPVEGGG ESGNLLGQMA AGMPQPQAIQ VTHEEREAIE RLEAMGFERA LVLEVFFACN
401: KNEELAANYL LDHMHEFEE

Arabidopsis Description

RAD23CUbiquitin receptor RAD23c [Source:UniProtKB/Swiss-Prot;Acc:Q84L31]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.