CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P15580_001	Banana	cytosol	33.33	56.56
KRH75377	Soybean	cytosol, nucleus	58.93	56.38
Os02t0465000-00	Rice	cytosol	13.6	55.43
GSMUA_Achr5P05860_001	Banana	cytosol	57.07	54.59
KRG90804	Soybean	cytosol	58.13	54.23
KRH45279	Soybean	cytosol	57.87	54.11
KRH35965	Soybean	cytosol	58.4	53.68
GSMUA_Achr9P15590_001	Banana	cytosol	19.73	52.11
TraesCS5B01G204000.1	Wheat	cytosol	54.13	51.39
TraesCS5D01G211900.1	Wheat	cytosol	53.6	50.89
GSMUA_Achr3P07380_001	Banana	cytosol	55.47	50.86
TraesCS5A01G204200.1	Wheat	cytosol	53.33	50.63
Os08t0430200-01	Rice	cytosol	54.67	50.49
KXG35597	Sorghum	cytosol	53.33	50.25
Os09t0407200-01	Rice	cytosol	52.0	49.74
TraesCS7B01G113500.1	Wheat	cytosol	52.0	47.91
Os06t0264300-01	Rice	cytosol, nucleus, plastid	52.0	47.22
TraesCS7D01G209100.1	Wheat	cytosol	51.2	47.17
KRH09619	Soybean	cytosol, nucleus, plasma membrane	26.13	47.12
KXG19738	Sorghum	cytosol	51.2	47.06
KRH47002	Soybean	cytosol, nucleus, plastid	45.33	46.83
TraesCS7A01G206300.1	Wheat	cytosol	50.93	46.81
HORVU5Hr1G060920.1	Barley	mitochondrion	53.87	46.65
Zm00001d037326_P001	Maize	cytosol	49.6	46.27
KRH44654	Soybean	cytosol, nucleus, plastid	46.13	45.41
Zm00001d045665_P003	Maize	cytosol	49.6	45.37
Zm00001d005732_P001	Maize	cytosol	52.27	44.04
KRH23694	Soybean	cytosol	42.4	43.32
HORVU7Hr1G042100.8	Barley	cytosol	45.33	40.48
Zm00001d020419_P003	Maize	cytosol	44.8	36.76

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100817821	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:ACUP02011530
EnsemblPlantsGene:GLYMA_18G297400	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	UniProt:I1N5C6	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	EnsemblPlants:KRH01763	ProteinID:KRH01763	ProteinID:KRH01763.1	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26
InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000233E112
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:+:57485052..57491499

Molecular Weight (calculated)

40732.8 Da

IEP (calculated)

4.172

GRAVY (calculated)

-0.435

Length

375 amino acids

Sequence
(BLAST)

001: MKINVKTLKG THFVLQVNPQ DTVAVVKKNI ETAQGADVYP AAQQMLIHQG KVLNDATTLE ENKVVENNFV VIMLSKNKVS SGASSAPSNL GTQPQSSLPP
101: TSSTSQPPAS AVGQGESNSE QSPVITPPTI AVPSIYDHAA SNLMAGSNLE TTIQQILEMG GGNWDRDTVT GALHAAFNNP ERAIEYLYSG IPERADVPAA
201: VRSLITGQAE NSSIQSTQPA VPTGGPNTNP LNLFPQGLPN MSAIDNRGDL DSLRNREEFQ ALRETMRENP QILQPMIQEL GQQNPQLMQI IQDHQEDILD
301: LMNEPEGDEN LQSQLDSMIS GTVTITPEEN EAIQRLEAMG FHRDIVVEAF FACNKNEDLA ANYLLDHPDE FMPTD

Best Arabidopsis Sequence Match ( AT1G16190.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED

Arabidopsis Description

RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.