CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08049
KRH28809
KRH69766
KRH76642

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	KRH08049	AT4G38630.1	20059542
AT1G16190.1	KRH28809	AT4G38630.1	20059542
AT1G16190.1	KRH69766	AT4G38630.1	20059542
AT1G16190.1	KRH76642	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44654	Soybean	cytosol, nucleus, plastid	90.63	86.35
KRH09619	Soybean	cytosol, nucleus, plasma membrane	44.63	77.88
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	11.57	77.78
KRH23694	Soybean	cytosol	74.93	74.11
Solyc03g117780.2.1	Tomato	cytosol	68.87	68.31
PGSC0003DMT400036871	Potato	cytosol	68.32	67.57
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	31.68	66.09
Bra026728.1-P	Field mustard	cytosol	65.29	66.02
CDY52848	Canola	cytosol	65.29	66.02
CDX81753	Canola	cytosol, nucleus, plastid	64.46	64.46
CDY33351	Canola	cytosol, nucleus, plastid	63.64	64.17
VIT_09s0018g01400.t01	Wine grape	cytosol	72.45	63.99
AT1G79650.4	Thale cress	cytosol	69.15	63.54
AT1G16190.1	Thale cress	cytosol	63.64	62.77
TraesCS6A01G149500.1	Wheat	cytosol	63.36	62.67
TraesCS6B01G177400.1	Wheat	cytosol	63.09	62.4
TraesCS6D01G138800.2	Wheat	cytosol	63.09	62.4
GSMUA_Achr4P20500_001	Banana	cytosol	66.39	61.95
GSMUA_Achr1P25580_001	Banana	cytosol	65.01	61.46
CDY35071	Canola	cytosol	61.71	60.7
Os02t0179300-01	Rice	plasma membrane	61.71	60.7
Bra026076.1-P	Field mustard	cytosol	61.71	60.7
Zm00001d053738_P001	Maize	cytosol	60.88	60.05
EES04633	Sorghum	cytosol	60.88	59.89
CDX79333	Canola	cytosol	63.36	59.28
HORVU6Hr1G029760.4	Barley	cytosol	55.37	58.77
GSMUA_Achr7P05120_001	Banana	cytosol	42.15	56.04
CDX67983	Canola	plastid	64.46	54.67
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	63.36	53.49
KRH75377	Soybean	cytosol, nucleus	54.27	50.26
KRH45279	Soybean	cytosol	55.1	49.88
KRG90804	Soybean	cytosol	53.72	48.51
KRH35965	Soybean	cytosol	53.72	47.79
KRH01763	Soybean	cytosol	46.83	45.33

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	EntrezGene:100778187	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	EMBL:ACUP02004132
EnsemblPlantsGene:GLYMA_07G002800	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	UniProt:I1KG42	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	EnsemblPlants:KRH47002	ProteinID:KRH47002	ProteinID:KRH47002.1	PFAM:PF00240	PFAM:PF00627
PFAM:PF09280	PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26
InterPro:Rad23	SMART:SM00165	SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934
SUPFAM:SSF54236	InterPro:STI1_HS-bd	TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI00023387E6
InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr7:-:219920..225861

Molecular Weight (calculated)

38845.5 Da

IEP (calculated)

4.237

GRAVY (calculated)

-0.371

Length

363 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVQPS DTVMAVKKNI EDVQGKDNYP CGQQLLIHNG KVLKDETTLV ENKVSEDGFL VVMLSKSKTS GSAAASSVQP ASNPATTVSM
101: SNSTPPSDPP VQTQAANNST SSTDAPTTNV SADTYGLAAS NLVAGSNLEQ TIQQIMDMGG GNWDRDTVSR ALRAAYNNPE RAIDYLYSGI PEAAEVAVPV
201: PQTAGMSSGA VPVGPNSSPL NMFPQETISS TGAGLGSLDF LRNNPQFQAL RSMVQSNPQI LQPVLQELGK QNPGLLRLIQ EHHGEFLQLI NEPVEGSEGD
301: MFEQPEQDMP HAINVTPAEQ EAIGRLEAMG FDRASVIEAF LACDRDEQLA ANYLLENAGD FED

Best Arabidopsis Sequence Match ( AT1G79650.2 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQP VSATTSSTKP
101: AAPSTTQSSP VPASPIPAQE QPAAQTDTYG QAASTLVSGS SLEQMVQQIM EMGGGSWDKE TVTRALRAAY NNPERAVDYL YSGIPQTAEV AVPVPEAQIA
201: GSGAAPVAPA SGGPNSSPLD LFPQETVAAA GSGDLGTLEF LRNNDQFQQL RTMVHSNPQI LQPMLQELGK QNPQLLRLIQ ENQAEFLQLV NEPYEGSDGE
301: GDMFDQPEQE MPHAINVTPA EQEAIQRLEA MGFDRALVIE AFLACDRNEE LAANYLLENS GDFED

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.