Factsheet for GSMUA_Achr4P20500_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr2P11290_001
GSMUA_Achr4P25580_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	GSMUA_Achr11P...	AT4G38630.1	20059542
AT1G16190.1	GSMUA_Achr2P11290_001	AT4G38630.1	20059542
AT1G16190.1	GSMUA_Achr4P25580_001	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	10.8	77.78
GSMUA_Achr1P25580_001	Banana	cytosol	73.01	73.96
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	31.88	71.26
Solyc03g117780.2.1	Tomato	cytosol	62.98	66.94
GSMUA_Achr7P05120_001	Banana	cytosol	46.79	66.67
Os02t0179300-01	Rice	plasma membrane	62.98	66.4
KRH47002	Soybean	cytosol, nucleus, plastid	61.95	66.39
PGSC0003DMT400036871	Potato	cytosol	62.47	66.21
TraesCS6D01G138800.2	Wheat	cytosol	61.18	64.85
TraesCS6A01G149500.1	Wheat	cytosol	61.18	64.85
TraesCS6B01G177400.1	Wheat	cytosol	60.93	64.58
EES04633	Sorghum	cytosol	60.67	63.96
Zm00001d053738_P001	Maize	cytosol	60.41	63.86
KRH23694	Soybean	cytosol	60.15	63.76
KRH44654	Soybean	cytosol, nucleus, plastid	62.21	63.52
KRH09619	Soybean	cytosol, nucleus, plasma membrane	33.93	63.46
CDX81753	Canola	cytosol, nucleus, plastid	57.07	61.16
Bra026728.1-P	Field mustard	cytosol	56.3	61.0
CDY52848	Canola	cytosol	56.3	61.0
HORVU6Hr1G029760.4	Barley	cytosol	53.21	60.53
AT1G16190.1	Thale cress	cytosol	56.56	59.78
AT1G79650.4	Thale cress	cytosol	60.67	59.75
CDY33351	Canola	cytosol, nucleus, plastid	54.76	59.17
CDY35071	Canola	cytosol	55.53	58.54
Bra026076.1-P	Field mustard	cytosol	55.53	58.54
VIT_09s0018g01400.t01	Wine grape	cytosol	60.93	57.66
CDX79333	Canola	cytosol	57.07	57.22
GSMUA_Achr9P15580_001	Banana	cytosol	31.36	55.2
CDX67983	Canola	plastid	57.07	51.87
Bra003599.1-P	Field mustard	cytosol, mitochondrion, plasma membrane, plastid	56.81	51.4
GSMUA_Achr5P05860_001	Banana	cytosol	49.1	48.72
GSMUA_Achr3P07380_001	Banana	cytosol	49.61	47.19
GSMUA_Achr9P15590_001	Banana	cytosol	15.17	41.55

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0043161	EnsemblPlantsGene:GSMUA_Achr4G20500_001	EnsemblPlants:GSMUA_Achr4P20500_001	EnsemblPlants:GSMUA_Achr4T20500_001	InterPro:IPR000626	InterPro:IPR015940
InterPro:IPR036353	UniProt:M0SQL3	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI000296627E	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

Putative DNA repair protein RAD23-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20500_001]

Coordinates

chr4:-:21111978..21122666

Molecular Weight (calculated)

42042.6 Da

IEP (calculated)

4.418

GRAVY (calculated)

-0.371

Length

389 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG THFVIRVQPN DTIIAVKKNI EQEQGKDSYP WGQQLLIHNG KVLKDETTLE ENKVNEDGFL VVMLSKSKAA GSSGSSSAQP PTTSAVQHPA
101: PKEPPAQVPV QVPAQVSAQT PSQVPAQVPP RISAEAPSQI LASADAYGQA ASNLIEGSNL EQMVGQLMEM GGGNWDRETV LLALRVAYNN PERAVEYLYS
201: GIPATAEIAV PVDPFPSSQA FAQGADSTDL AAPGHPSGAP NSSPLNMFPQ GNINTGVGTG GGSLDFLRNN QQFLALRAMV QANPQILQPM LQELSKQNPQ
301: LLRLIQEHHA EFLQLINEPI EGFEGDMFDQ ADQDEMPHTI NVTAEEQEAI RRLEAMGFDR ARVIEAFLAC DKNEQLAANY LLEHAGDED

Best Arabidopsis Sequence Match ( AT1G79650.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D

Arabidopsis Description

RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.