Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
TraesCS4A01G071300.2 | |
TraesCS4B01G227200.2 | |
TraesCS4D01G227900.2 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G16190.1 | TraesCS4A01G071300.2 | AT4G38630.1 | 20059542 |
AT1G16190.1 | TraesCS4B01G227200.2 | AT4G38630.1 | 20059542 |
AT1G16190.1 | TraesCS4D01G227900.2 | AT4G38630.1 | 20059542 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS6D01G138800.2 | Wheat | cytosol | 99.18 | 99.18 |
TraesCS6B01G177400.1 | Wheat | cytosol | 98.64 | 98.64 |
HORVU6Hr1G029760.4 | Barley | cytosol | 88.01 | 94.44 |
EES04633 | Sorghum | cytosol | 83.38 | 82.93 |
Zm00001d053738_P001 | Maize | cytosol | 79.02 | 78.8 |
Os02t0179300-01 | Rice | plasma membrane | 77.66 | 77.24 |
KRH09619 | Soybean | cytosol, nucleus, plasma membrane | 36.24 | 63.94 |
KRH47002 | Soybean | cytosol, nucleus, plastid | 62.67 | 63.36 |
Solyc03g117780.2.1 | Tomato | cytosol | 62.94 | 63.11 |
PGSC0003DMT400036871 | Potato | cytosol | 62.67 | 62.67 |
CDX81753 | Canola | cytosol, nucleus, plastid | 61.58 | 62.26 |
GSMUA_Achr7P05130_001 | Banana | endoplasmic reticulum | 29.43 | 62.07 |
CDY52848 | Canola | cytosol | 60.49 | 61.84 |
Bra026728.1-P | Field mustard | cytosol | 60.49 | 61.84 |
AT1G16190.1 | Thale cress | cytosol | 61.85 | 61.68 |
GSMUA_Achr4P20500_001 | Banana | cytosol | 64.85 | 61.18 |
KRH23694 | Soybean | cytosol | 61.04 | 61.04 |
CDY33351 | Canola | cytosol, nucleus, plastid | 59.67 | 60.83 |
GSMUA_Achr1P25580_001 | Banana | cytosol | 63.49 | 60.68 |
GSMUA_Achr7P05120_001 | Banana | cytosol | 44.96 | 60.44 |
KRH44654 | Soybean | cytosol, nucleus, plastid | 62.13 | 59.84 |
Bra026076.1-P | Field mustard | cytosol | 58.31 | 57.99 |
CDY35071 | Canola | cytosol | 58.04 | 57.72 |
AT1G79650.4 | Thale cress | cytosol | 62.13 | 57.72 |
CDX79333 | Canola | cytosol | 59.95 | 56.7 |
VIT_09s0018g01400.t01 | Wine grape | cytosol | 61.85 | 55.23 |
CDX67983 | Canola | plastid | 60.49 | 51.87 |
Bra003599.1-P | Field mustard | cytosol, mitochondrion, plasma membrane, plastid | 60.76 | 51.86 |
TraesCS7A01G206300.1 | Wheat | cytosol | 46.87 | 42.16 |
TraesCS5A01G204200.1 | Wheat | cytosol | 44.41 | 41.27 |
Protein Annotations
Gene3D:1.10.10.540 | Gene3D:1.10.8.10 | MapMan:19.2.4.4.1 | Gene3D:3.10.20.90 | ncoils:Coil | GO:GO:0003674 |
GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003684 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006289 |
GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0019538 |
GO:GO:0043161 | InterPro:IPR000626 | InterPro:IPR015940 | InterPro:IPR036353 | PFAM:PF00240 | PFAM:PF00627 |
PFAM:PF09280 | PRINTS:PR01839 | PFscan:PS50030 | PFscan:PS50053 | PANTHER:PTHR10621 | PANTHER:PTHR10621:SF26 |
InterPro:Rad23 | SMART:SM00165 | SMART:SM00213 | SMART:SM00727 | SUPFAM:SSF101238 | SUPFAM:SSF46934 |
SUPFAM:SSF54236 | InterPro:STI1_HS-bd | TIGRFAMs:TIGR00601 | EnsemblPlantsGene:TraesCS6A01G149500 | EnsemblPlants:TraesCS6A01G149500.1 | InterPro:UBA |
InterPro:UBA-like_sf | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | InterPro:XPC-bd | InterPro:XPC-bd_sf | SEG:seg |
Description
No Description!
Coordinates
chr6A:-:131446117..131453375
Molecular Weight (calculated)
39659.3 Da
IEP (calculated)
4.248
GRAVY (calculated)
-0.480
Length
367 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTVKTLKG THFEIRVQHN DTIMAVKKNI EEIQGKDSYP WGQQLLIHNG KVLKDESTLD ENQVSEDGFL VVMLSKSKAS ASSGASSAQP SSTPVTSQAP
101: PVAQPQAPQP QVPSTTTSQP ERPPAETPSS TVDLAASDLL SGSNLDTMIN QIMEMGGGSW DRDKLQRALR AAYNNPERAI DYLYSGIPVT AEVAVPVVGQ
201: GANTTDAAPG ETGLSGIPNT APLDLFPQGA SHAGGAAGGG SLDFLRNNQQ FQALREMVHT NPQILQPMLQ ELSKQNPQLL RLIQENNDEF LQLLNETFEG
301: GDGDFLDQAD QDEMPHAISV TPEEQEAIGR LEAMGFERAR VIEAFFACDR NEQLAANYLL EHAGDEE
101: PVAQPQAPQP QVPSTTTSQP ERPPAETPSS TVDLAASDLL SGSNLDTMIN QIMEMGGGSW DRDKLQRALR AAYNNPERAI DYLYSGIPVT AEVAVPVVGQ
201: GANTTDAAPG ETGLSGIPNT APLDLFPQGA SHAGGAAGGG SLDFLRNNQQ FQALREMVHT NPQILQPMLQ ELSKQNPQLL RLIQENNDEF LQLLNETFEG
301: GDGDFLDQAD QDEMPHAISV TPEEQEAIGR LEAMGFERAR VIEAFFACDR NEQLAANYLL EHAGDEE
001: MKLTVKTLKG SHFEIRVLPS DTIMAVKKNI EDSQGKDNYP CGQQLLIHNG KVLKDETSLV ENKVTEEGFL VVMLSKSKSG GSAGQASVQT SSVSQPVSAT
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D
101: TSSTKPAAPS TTQSSPVPAS PIPAQEQPAA QTDTYGQAAS TLVSGSSLEQ MVQQIMEMGG GSWDKETVTR ALRAAYNNPE RAVDYLYSGI PQTAEVAVPV
201: PEAQIAGSGA APVAPASGGP NSSPLDLFPQ ETVAAAGSGD LGTLEFLRNN DQFQQLRTMV HSNPQILQPM LQELGKQNPQ LLRLIQENQA EFLQLVNEPY
301: EGSDGEGDMF DQPEQEMPHA INVTPAEQEA IQRLEAMGFD RALVIEAFLA CDRNEELAAN YLLENSGDFE D
Arabidopsis Description
RAD23Rad23 UV excision repair protein family [Source:UniProtKB/TrEMBL;Acc:F4IF85]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.