CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX72742
CDX90286
CDY12093
CDY22415

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G16190.1	CDX72742	AT4G38630.1	20059542
AT1G16190.1	CDX90286	AT4G38630.1	20059542
AT1G16190.1	CDY12093	AT4G38630.1	20059542
AT1G16190.1	CDY22415	AT4G38630.1	20059542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52848	Canola	cytosol	87.6	88.58
CDY35071	Canola	cytosol	84.57	83.2
AT1G16190.1	Thale cress	cytosol	82.64	81.52
CDY33351	Canola	cytosol, nucleus, plastid	77.69	78.33
HORVU6Hr1G029720.1	Barley	cytosol, mitochondrion, nucleus	11.57	77.78
CDX79333	Canola	cytosol	73.0	68.3
PGSC0003DMT400036871	Potato	cytosol	68.59	67.85
KRH09619	Soybean	cytosol, nucleus, plasma membrane	38.57	67.31
Solyc03g117780.2.1	Tomato	cytosol	67.77	67.21
KRH23694	Soybean	cytosol	65.29	64.58
KRH47002	Soybean	cytosol, nucleus, plastid	64.46	64.46
VIT_09s0018g01400.t01	Wine grape	cytosol	70.8	62.53
KRH44654	Soybean	cytosol, nucleus, plastid	65.56	62.47
TraesCS6A01G149500.1	Wheat	cytosol	62.26	61.58
TraesCS6D01G138800.2	Wheat	cytosol	61.98	61.31
TraesCS6B01G177400.1	Wheat	cytosol	61.71	61.04
CDX67983	Canola	plastid	71.63	60.75
Os02t0179300-01	Rice	plasma membrane	60.61	59.62
Zm00001d053738_P001	Maize	cytosol	60.33	59.51
EES04633	Sorghum	cytosol	60.06	59.08
HORVU6Hr1G029760.4	Barley	cytosol	54.55	57.89
GSMUA_Achr4P20500_001	Banana	cytosol	61.16	57.07
GSMUA_Achr1P25580_001	Banana	cytosol	59.78	56.51
GSMUA_Achr7P05130_001	Banana	endoplasmic reticulum	27.0	56.32
GSMUA_Achr7P05120_001	Banana	cytosol	39.12	52.01
CDX74522	Canola	cytosol	52.34	50.0
CDY01661	Canola	cytosol	52.07	50.0
CDY58121	Canola	cytosol	51.52	48.7
CDX67404	Canola	cytosol	50.96	48.43
CDX74251	Canola	cytosol	49.59	44.89
CDX91998	Canola	cytosol	48.76	43.92
CDY26493	Canola	cytosol	31.96	32.68
CDX69474	Canola	cytosol	31.96	31.78
CDY26494	Canola	nucleus	23.14	31.23
CDY26496	Canola	cytosol	26.45	26.74
CDX69472	Canola	cytosol	25.9	26.48
CDY26495	Canola	cytosol	12.4	23.68
CDX69473	Canola	cytosol	28.37	15.63

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	MapMan:19.2.4.4.1	Gene3D:3.10.20.90	GO:A0A078D362	EnsemblPlants:CDX81753
ProteinID:CDX81753	ProteinID:CDX81753.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00136686001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF26	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SMART:SM00727	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:STI1_HS-bd
TIGRFAMs:TIGR00601	InterPro:UBA	InterPro:UBA-like_sf	UniParc:UPI0004EBB796	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg	:	:	:

Description

BnaC08g38480D

Coordinates

chrLK031826:+:623614..626360

Molecular Weight (calculated)

39096.7 Da

IEP (calculated)

4.107

GRAVY (calculated)

-0.438

Length

363 amino acids

Sequence
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSAQP TSMTTSTTSS
101: AMPAAASTNQ SIPVPASNST LAQEQPAGQS DTNAQAASTL ASGSSTEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE RETVQISGVG
201: TGADLAAPPA SGGPNSSPLD LFPQEAEAGA GELGTLDFLR GNDQFQQLRS MVNSNPQILQ PMLQELGKQN PQLLRLIQEN QAEFLQLINE PYEGSDGEMD
301: ILDQPEQEMP HAVNVTPAEQ EAIQRLEAMG FDRALVIEAF LACDRNEELA ANYLLENSAD FED

Best Arabidopsis Sequence Match ( AT1G16190.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED

Arabidopsis Description

RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.