CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008649.1-P	Field mustard	cytosol	87.67	93.02
CDY26493	Canola	cytosol	80.27	82.54
CDY26496	Canola	cytosol	58.36	59.33
CDX69472	Canola	cytosol	54.52	56.06
CDY26494	Canola	nucleus	39.45	53.53
AT5G16090.1	Thale cress	cytosol	24.38	52.05
GSMUA_Achr9P15590_001	Banana	cytosol	15.62	40.14
CDY58121	Canola	cytosol	38.9	36.98
CDY01661	Canola	cytosol	38.08	36.77
CDX67404	Canola	cytosol	38.36	36.65
CDX74522	Canola	cytosol	37.81	36.32
GSMUA_Achr5P05860_001	Banana	cytosol	38.36	35.71
CDX74251	Canola	cytosol	39.18	35.66
Os02t0465000-00	Rice	cytosol	8.77	34.78
CDX91998	Canola	cytosol	38.08	34.49
GSMUA_Achr9P15580_001	Banana	cytosol	20.55	33.94
GSMUA_Achr3P07380_001	Banana	cytosol	37.81	33.74
TraesCS5D01G211900.1	Wheat	cytosol	35.62	32.91
TraesCS5A01G204200.1	Wheat	cytosol	35.62	32.91
CDY52848	Canola	cytosol	32.33	32.87
Os06t0264300-01	Rice	cytosol, nucleus, plastid	36.99	32.69
TraesCS5B01G204000.1	Wheat	cytosol	35.34	32.66
Zm00001d037326_P001	Maize	cytosol	35.89	32.59
CDY33351	Canola	cytosol, nucleus, plastid	32.05	32.5
Os09t0407200-01	Rice	cytosol	34.79	32.4
CDY35071	Canola	cytosol	32.6	32.25
KXG19738	Sorghum	cytosol	35.89	32.11
CDX81753	Canola	cytosol, nucleus, plastid	31.78	31.96
TraesCS7B01G113500.1	Wheat	cytosol	35.62	31.94
TraesCS7D01G209100.1	Wheat	cytosol	35.62	31.94
Zm00001d045665_P003	Maize	cytosol	35.62	31.71
KXG35597	Sorghum	cytosol	34.25	31.41
TraesCS7A01G206300.1	Wheat	cytosol	35.07	31.37
Os08t0430200-01	Rice	cytosol	34.79	31.28
CDY26495	Canola	cytosol	16.16	31.05
HORVU5Hr1G060920.1	Barley	mitochondrion	35.34	29.79
HORVU7Hr1G042100.8	Barley	cytosol	32.33	28.1
CDX69473	Canola	cytosol	49.86	27.62
CDX79333	Canola	cytosol	29.04	27.32
Zm00001d005732_P001	Maize	cytosol	33.15	27.19
Zm00001d020419_P003	Maize	cytosol	32.05	25.6
CDX67983	Canola	plastid	29.59	25.23

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078BZV7	EnsemblPlants:CDX69474
ProteinID:CDX69474	ProteinID:CDX69474.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00135463001	InterPro:IPR000626
InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280	PRINTS:PR01839
PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23	SMART:SM00165
SMART:SM00213	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:UBA	InterPro:UBA-like_sf
UniParc:UPI0004EDB610	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf	SEG:seg

Description

BnaA10g18230D

Coordinates

chrLK031790:+:394490..397160

Molecular Weight (calculated)

40208.9 Da

IEP (calculated)

4.354

GRAVY (calculated)

-0.505

Length

365 amino acids

Sequence
(BLAST)

001: MKIFVKTLKG TRFEIQVSPE DSVGDVKKNI ETVMGVTAYP AAEQVLIHKG KVLKDETTLA ANNVSEKSVI GVIKKKPAST GTGGPYISGA LGEFFFFVHA
101: AHPYSTAAET PVTPTEPAWD AASNGNYESI SESNIQQILE MVRGAWSREA VAYALCLAYD DLNKALEYIY FGIPVKSEDH YTTEGTQEQT QEPAEADLEW
201: SLDSLRHTPE FEHLRPLVQS DPSLLMDFLL MLKEQNPPFF QLIQDNKADF LRLLLEQPQE PNNGGDGGNQ VGDSEETQVV QPPKELQADQ TNEPNNGGGD
301: GGNQVGESKE TKVEVATPED YELIERLEAL GFERGDAAVA YFACNKNVQV AANHLLGYKH ESRRE

Best Arabidopsis Sequence Match ( AT1G16190.1 )
(BLAST)

001: MKLTVKTLKG SHFEIRVLPT DTIMAVKKNI EDSQSKDNYP CGQQLLIHNG KVLKDETTLV ENKVTEEGFL VVMLSKSKTA SSAGPSSTQP TSTTTSTISS
101: TTLAAPSTTQ SIAVPASNST PVQEQPTAQS DTYGQAASTL VSGSSIEQMV QQIMEMGGGS WDKETVTRAL RAAYNNPERA VDYLYSGIPE TVTIPATNLS
201: GVGSGRELTA PPPSGGPNSS PLDLFPQEAV SDAAGGDLGT LEFLRGNDQF QQLRSMVNSN PQILQPMLQE LGKQNPQLLR LIQENQAEFL QLLNEPYEGS
301: DGDVDIFDQP DQEMPHSVNV TPEEQESIER LEAMGFDRAI VIEAFLSCDR NEELAANYLL EHSADFED

Arabidopsis Description

RAD23ARAD23A [Source:UniProtKB/TrEMBL;Acc:A0A178W4Q3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.