CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69472	Canola	cytosol	77.16	78.03
CDX69474	Canola	cytosol	59.33	58.36
CDY26493	Canola	cytosol	57.66	58.31
CDY26494	Canola	nucleus	37.6	50.19
AT5G16090.1	Thale cress	cytosol	22.56	47.37
GSMUA_Achr9P15590_001	Banana	cytosol	14.48	36.62
Os02t0465000-00	Rice	cytosol	8.91	34.78
CDY01661	Canola	cytosol	35.93	34.13
CDX67404	Canola	cytosol	35.93	33.77
CDX74522	Canola	cytosol	35.65	33.68
CDY58121	Canola	cytosol	35.93	33.59
CDX91998	Canola	cytosol	37.05	33.0
GSMUA_Achr5P05860_001	Banana	cytosol	35.93	32.91
CDX74251	Canola	cytosol	36.49	32.67
GSMUA_Achr9P15580_001	Banana	cytosol	20.06	32.58
CDY26495	Canola	cytosol	16.43	31.05
GSMUA_Achr3P07380_001	Banana	cytosol	34.54	30.32
Os09t0407200-01	Rice	cytosol	32.31	29.59
Os06t0264300-01	Rice	cytosol, nucleus, plastid	33.7	29.3
KXG19738	Sorghum	cytosol	33.15	29.17
Zm00001d037326_P001	Maize	cytosol	32.59	29.1
Zm00001d045665_P003	Maize	cytosol	33.15	29.02
TraesCS5A01G204200.1	Wheat	cytosol	31.75	28.86
TraesCS7D01G209100.1	Wheat	cytosol	32.59	28.75
TraesCS5D01G211900.1	Wheat	cytosol	31.48	28.61
TraesCS7B01G113500.1	Wheat	cytosol	32.31	28.5
KXG35597	Sorghum	cytosol	31.48	28.39
TraesCS5B01G204000.1	Wheat	cytosol	31.2	28.35
Os08t0430200-01	Rice	cytosol	32.03	28.33
TraesCS7A01G206300.1	Wheat	cytosol	31.48	27.7
CDX69473	Canola	cytosol	50.7	27.62
CDY33351	Canola	cytosol, nucleus, plastid	27.58	27.5
CDY35071	Canola	cytosol	27.86	27.1
CDY52848	Canola	cytosol	26.74	26.74
CDX81753	Canola	cytosol, nucleus, plastid	26.74	26.45
HORVU5Hr1G060920.1	Barley	mitochondrion	31.48	26.1
Zm00001d005732_P001	Maize	cytosol	30.92	24.94
HORVU7Hr1G042100.8	Barley	cytosol	28.97	24.76
CDX79333	Canola	cytosol	26.46	24.48
Zm00001d020419_P003	Maize	cytosol	28.69	22.54
CDX67983	Canola	plastid	26.46	22.2

Protein Annotations

Gene3D:1.10.10.540	Gene3D:1.10.8.10	Gene3D:3.10.20.90	MapMan:35.1	GO:A0A078GME6	UniProt:A0A078GME6
EnsemblPlants:CDY26496	ProteinID:CDY26496	ProteinID:CDY26496.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006289	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538	GO:GO:0043161	EnsemblPlantsGene:GSBRNA2T00035312001
InterPro:IPR000626	InterPro:IPR015940	InterPro:IPR036353	PFAM:PF00240	PFAM:PF00627	PFAM:PF09280
PRINTS:PR01839	PFscan:PS50030	PFscan:PS50053	PANTHER:PTHR10621	PANTHER:PTHR10621:SF8	InterPro:Rad23
SMART:SM00165	SMART:SM00213	SUPFAM:SSF101238	SUPFAM:SSF46934	SUPFAM:SSF54236	InterPro:UBA
InterPro:UBA-like_sf	UniParc:UPI0004EEAC81	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	InterPro:XPC-bd	InterPro:XPC-bd_sf
SEG:seg	:	:	:	:	:

Description

BnaC09g41720DBnaC09g41720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GME6]

Coordinates

chrLK032190:-:496475..498705

Molecular Weight (calculated)

39627.0 Da

IEP (calculated)

4.182

GRAVY (calculated)

-0.581

Length

359 amino acids

Sequence
(BLAST)

001: MRIFVKTLKG DRFEIQVNLE DLVADVKKNI ETVMGVTAEE QMLIHKGKVL KDETTLEANN VSEKSIIGVI KRKPASTATS TSTETPTERA SAGASYVASE
101: RVSESSIQKI LGMVGGGWDR YMVTSALYLA YDDVDKALEY LYFELPGQSE DPYIAEGTQD QTQEHEAPTE ADELRFFDFL NGTPEQEYLR ALARSDPSII
201: KDFVEMLEEQ DPPLFVLIQD NKALFLRLLL EVEGGACGNE MDQAHEHQAV QTNEPNNGGD GGNQVGDSEE TQVVQPPKEL QADQTNEPNN GGGDGGNQVG
301: ESKETKVEVA TPEDYELIER LEALGFERGD AAVAYFACNK NVQVAANHLL GYKHESRRE

Best Arabidopsis Sequence Match ( AT5G38470.1 )
(BLAST)

001: MKIFVKTLSG SNFEIEVKPA DKVSDVKTAI ETVKGAEYPA AKQMLIHQGK VLKDETTLEE NNVVENSFIV IMLSKTKASP SGASTASAPA PSATQPQTVA
101: TPQVSAPTAS VPVPTSGTAT AAAPATAASV QTDVYGQAAS NLVAGTTLES TVQQILDMGG GSWDRDTVVR ALRAAFNNPE RAVEYLYSGI PAQAEIPPVA
201: QAPATGEQAA NPLAQPQQAA APAAATGGPN ANPLNLFPQG MPAADAGAGA GNLDFLRNSQ QFQALRAMVQ ANPQILQPML QELGKQNPQL VRLIQEHQAD
301: FLRLINEPVE GEENVMEQLE AAMPQAVTVT PEEREAIERL EGMGFDRAMV LEVFFACNKN EELAANYLLD HMHEFEDQ

Arabidopsis Description

RAD23DUbiquitin receptor RAD23d [Source:UniProtKB/Swiss-Prot;Acc:Q84L30]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.